Pairwise Alignments

Query, 709 a.a., ATP-dependent DNA helicase UvrD/PcrA, proteobacterial paralog from Variovorax sp. SCN45

Subject, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

 Score =  248 bits (633), Expect = 7e-70
 Identities = 214/682 (31%), Positives = 316/682 (46%), Gaps = 89/682 (13%)

Query: 24  LASLNEAQRAAVEHGVGAAVGAGAQADQRPLLVIAGAGSGKTSTLAHRVAHLIA-GGVDP 82
           L  LN+ QR AV             A    LL++AGAGSGKT  L HR+A L++     P
Sbjct: 8   LDGLNDKQREAVA------------APLENLLILAGAGSGKTRVLVHRIAWLMSVEEASP 55

Query: 83  QRLLLLTFSRRAAQEMGRRAGQVLTKVLGLKSEAPPSLPWAGTFHGIGARLLREYAAQIG 142
             ++ +TF+ +AA EM  R  +++            S  W GTFHGI  R+LR +     
Sbjct: 56  FSVMAVTFTNKAAAEMRGRIEELM--------HGTASGMWCGTFHGICHRILRAHYLDAK 107

Query: 143 LDENFTIHDRGDAEDLMG--LARHELG--------LSSTVNRFPRKGTCLSIYSRCVNTR 192
           L E+F I D  D + L+   +  H L         ++  +N    +G    +    +N  
Sbjct: 108 LLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQKDEG----LRPTHINAF 163

Query: 193 APLAEVLRESFPWCGEWEAELKTLFGAYVEAKHRQNVLDYDDLLLYWAGMV-AEPELAAH 251
            P+ +   +              L+ AY EA  R  ++D+ ++LL    ++     +  H
Sbjct: 164 DPVTQTYLK--------------LYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREH 209

Query: 252 VGARFDHVLVDEYQDTNLLQASILLALKPDGRGVTVVGDDAQSIYSFRGATVRNILDFPS 311
             ARF H+LVDE+QDTN +Q + L  +      V +VGDD QSIY +RGA V NI  F  
Sbjct: 210 YQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIVGDDDQSIYGWRGARVENIEKFTR 269

Query: 312 QFTQDARVVTLERNYRSTQPILDVSNRVIAQAAERHAKTLWTDKPSAGKPLLVL-VPDEA 370
           +F      + LE+NYRST+ IL+ SN +IA  +ER  K LWTD    G+P+ V    +E 
Sbjct: 270 EF-PSVNTIRLEQNYRSTKTILEASNTLIANNSERMGKQLWTD-GLVGEPISVYSAYNEL 327

Query: 371 GQARWVADKVLAHREGGLALKSQAVLFRTSTHSAALELELARRNIPFVKFGGLKFLEASH 430
            +AR+V  K+   +E G  L   A+L+R +  S  LE  L + ++ +  +GG++F E   
Sbjct: 328 DEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSRVLEEALLQASLAYRIYGGMRFFERQE 387

Query: 431 VKDLLAVLRFAQNPRGRMAGFRVTQLIP-GIGPVT-GTRLLDAMDQAAD----PVAAVRD 484
           +KD L+ LR   N     A  RV    P G+G  T  T    A D+        V  + D
Sbjct: 388 IKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDASVGLLND 447

Query: 485 FVPPSAARAQWADFATAYEALRSPALEWPADVEVAMAWYQPHLERLYEDTSGVR-RADVE 543
            V    A +  + F     AL    ++ P  V    A     L  +Y+   G + +A +E
Sbjct: 448 QVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGEKSKARIE 507

Query: 544 QLARLAAGYGSRER------------FLTELTLDPPEATSDRPGPPLLDEDYLILSTIHS 591
            L  L       E+            FLT   L+  E  +D        +D + L T+HS
Sbjct: 508 NLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADE------HDDAVQLMTLHS 561

Query: 592 AKGQEWNSVHVLNVVDGCLPADV-AQSAHELEEERRLLYVAMTRARDHLHLLVPQRFYVT 650
           AKG E+  V ++ V +G  P+ + A+ A  LEEERRL YV MTRA         Q+ Y+T
Sbjct: 562 AKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAM--------QKLYIT 613

Query: 651 QQAVRG--DRHLYANRTRFITD 670
              +R    +  Y   +RFI +
Sbjct: 614 YAEMRRLYGQDKYHKPSRFIRE 635