Pairwise Alignments

Query, 709 a.a., ATP-dependent DNA helicase UvrD/PcrA, proteobacterial paralog from Variovorax sp. SCN45

Subject, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

 Score =  193 bits (490), Expect = 3e-53
 Identities = 177/625 (28%), Positives = 288/625 (46%), Gaps = 62/625 (9%)

Query: 53  PLLVIAGAGSGKTSTLAHRVAHLIAG-GVDPQRLLLLTFSRRAAQEMGRRAGQVLTKVLG 111
           P LV+AGAGSGKT  + +++A+L+   G   + +  +TF+ +AA+EM  R  Q L K   
Sbjct: 17  PCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAREMKERVAQTLGK--- 73

Query: 112 LKSEAPPSLPWAGTFHGIGARLLREYAAQIGLDENFTIHDRGDAEDLMG-LARHELGLSS 170
              E+   +    TFH +G  ++R     +GL   F++ D  D   L+  L   +L    
Sbjct: 74  --GESRGLM--VSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTEKQLDGDK 129

Query: 171 TVNRFPRKGTCLSIYSRCVNTRA--PLAEVLRESFPWCGEWEAELKTLFGAYVEAKHRQN 228
            + R       LS  S   N     P A+ + +     GE +      F  Y +     N
Sbjct: 130 DLLRL-----LLSTISNWKNDMLTPPQAKAMAK-----GEQQLLFAHCFELYQKQMQSYN 179

Query: 229 VLDYDDLLLYWAGMV-AEPELAAHVGARFDHVLVDEYQDTNLLQASILLALKPDGRGVTV 287
            LD+DDL+L    ++ +  E+      R  ++LVDEYQDTN  Q  ++  L  +   +TV
Sbjct: 180 ALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTV 239

Query: 288 VGDDAQSIYSFRGATVRNIL----DFPSQFTQDARVVTLERNYRSTQPILDVSNRVIAQA 343
           VGDD QSIYS+RGA  +N++    DFPS      +++ LE+NYRST  IL  +N +IA  
Sbjct: 240 VGDDDQSIYSWRGAKPQNLVLLGEDFPS-----LKLIKLEQNYRSTSRILRAANILIANN 294

Query: 344 AERHAKTLWTDKPSAGKPLLVLVPDEAGQARWVADKVLAHR-EGGLALKSQAVLFRTSTH 402
              + K L+++     K  ++L  +E  +A  V  +++AH+       +  A+L+R +  
Sbjct: 295 PHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQ 354

Query: 403 SAALELELARRNIPFVKFGGLKFLEASHVKDLLAVLRFAQNPRGRMAGFRVTQLIP-GIG 461
           S  +E  L +  +P+   GG  F   + +KD++A LR   NP    A  R+       IG
Sbjct: 355 SRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIG 414

Query: 462 PVT-----------GTRLLDAMDQ-------AADPVAAVRDFVPPSAARAQWADFATAYE 503
           P T           G  L  A  +       +   +  +R F     A A  A+     E
Sbjct: 415 PATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVE 474

Query: 504 ALRSPAL-----EWPADVEVAMAWYQPHLERLYEDTSGVRRADVEQLARLAAGYGSRERF 558
           A+R+        +W  +   +    +  ++ + +  S +  AD+E           +E+ 
Sbjct: 475 AVRALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWI-VADLE-----GDNPDQQEKT 528

Query: 559 LTELTLDPPEATSDRPGPPLLDEDYLILSTIHSAKGQEWNSVHVLNVVDGCLPADVAQSA 618
           L E+            G    D D + L T+H++KG E+  V+++   +G LP   +   
Sbjct: 529 LKEVVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDE 588

Query: 619 HELEEERRLLYVAMTRARDHLHLLV 643
             +EEERRL+YV +TRA+  L  +V
Sbjct: 589 ENVEEERRLMYVGITRAQRELTFIV 613