Pairwise Alignments

Query, 709 a.a., ATP-dependent DNA helicase UvrD/PcrA, proteobacterial paralog from Variovorax sp. SCN45

Subject, 689 a.a., UvrD2 DNA helicase from Sinorhizobium meliloti 1021

 Score =  838 bits (2164), Expect = 0.0
 Identities = 430/691 (62%), Positives = 511/691 (73%), Gaps = 7/691 (1%)

Query: 21  AAALASLNEAQRAAVEHGVGAAVGAGAQADQRPLLVIAGAGSGKTSTLAHRVAHLIAGGV 80
           A  L  LNE QR AVE+G+GA  GA A     PLL+IAGAGSGKT+TLAHRVAHLI  G 
Sbjct: 4   ATHLEKLNERQRCAVEYGIGAEEGAQAG----PLLIIAGAGSGKTNTLAHRVAHLIVNGA 59

Query: 81  DPQRLLLLTFSRRAAQEMGRRAGQVLTKVLGLKSEA-PPSLPWAGTFHGIGARLLREYAA 139
           DP+R+LL+TFSRRAA EM RR  ++  +VLG  S     +L WAGTFHGIGARLLR YA 
Sbjct: 60  DPRRILLMTFSRRAAAEMSRRVERICAQVLGRSSGMMTDALSWAGTFHGIGARLLRIYAE 119

Query: 140 QIGLDENFTIHDRGDAEDLMGLARHELGLSSTVNRFPRKGTCLSIYSRCVNTRAPLAEVL 199
           QIGL+  FTIHDR D+ DL+ L RHELG S T +RFP KGTCL+IYSR VN    L EVL
Sbjct: 120 QIGLNAEFTIHDREDSADLINLIRHELGFSKTESRFPTKGTCLAIYSRTVNAEMRLNEVL 179

Query: 200 RESFPWCGEWEAELKTLFGAYVEAKHRQNVLDYDDLLLYWAGMVAEPELAAHVGARFDHV 259
           R  +PW   WE +L+ LF  YVEAK  QNVLDYDDLLLYWA MV++  LA  +G RFD+V
Sbjct: 180 RSWYPWVAGWEQQLQELFAGYVEAKQAQNVLDYDDLLLYWAQMVSDASLADDIGNRFDYV 239

Query: 260 LVDEYQDTNLLQASILLALKPDGRGVTVVGDDAQSIYSFRGATVRNILDFPSQFTQDARV 319
           LVDEYQDTN LQ+S+LLALKPDGRG+TVVGDDAQSIYSFR ATVRNILDFP QF   A +
Sbjct: 240 LVDEYQDTNKLQSSVLLALKPDGRGLTVVGDDAQSIYSFRAATVRNILDFPKQFAPAAEI 299

Query: 320 VTLERNYRSTQPILDVSNRVIAQAAERHAKTLWTDKPSAGKPLLVLVPDEAGQARWVADK 379
           VTL+RNYRSTQPIL  +N VI  A ER  K LWTD+ SA +P L+ V DEA QA  + ++
Sbjct: 300 VTLDRNYRSTQPILAAANGVIDLARERFTKNLWTDRESAERPKLLTVKDEADQANCIVEQ 359

Query: 380 VLAHREGGLALKSQAVLFRTSTHSAALELELARRNIPFVKFGGLKFLEASHVKDLLAVLR 439
           VLA+RE G+ LK QAVLFRTS+HS  LE+EL RRNIPFVKFGGLKFL+++HVKD+LAVLR
Sbjct: 360 VLANRESGMLLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAVLR 419

Query: 440 FAQNPRGRMAGFRVTQLIPGIGPVTGTRLLDAMDQAADPVAAVRDFVPPSAARAQWADFA 499
           FAQNPR R+AGFR+ Q++PG+GP T  ++LD +    +P+ A+ +   P  +   W    
Sbjct: 420 FAQNPRDRVAGFRLLQMLPGVGPQTAGKILDTIAADPEPLMALGEVPAPPRSGTDWMSLV 479

Query: 500 TAYEALRSPALEWPADVEVAMAWYQPHLERLYEDTSGVRRADVEQLARLAAGYGSRERFL 559
              +ALR P   WP ++E+A  WY+PHLER++ED    RRAD+ QL ++AAGY SRERFL
Sbjct: 480 ELLQALRKPGSAWPTEIEMARMWYEPHLERIHEDAE-TRRADLVQLEQIAAGYPSRERFL 538

Query: 560 TELTLDPPEATSDRPGPPLLDEDYLILSTIHSAKGQEWNSVHVLNVVDGCLPADVAQ-SA 618
           TELTLDPP+ATSD+ G PLLDEDYLILSTIHSAKGQEW SV +LNVVDGC+P+D+A  ++
Sbjct: 539 TELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWRSVFMLNVVDGCIPSDLATGTS 598

Query: 619 HELEEERRLLYVAMTRARDHLHLLVPQRFYVTQQAVRGDRHLYANRTRFITDADLAGFEQ 678
           HELEEERRLLYV MTRA+D L L+VPQRF+   Q  +GDRH+YA+RTRFI    L  FE 
Sbjct: 599 HELEEERRLLYVGMTRAKDQLALMVPQRFFTGGQHAQGDRHVYASRTRFIPATLLQFFES 658

Query: 679 QTWPPPPERPPAVPPPTAVIDLRNRMRAAWR 709
             WP               ID+  RMR  WR
Sbjct: 659 ANWPVASPNVSERSAKQIRIDVAARMRTMWR 689