Pairwise Alignments

Query, 543 a.a., Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) from Variovorax sp. SCN45

Subject, 540 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  327 bits (837), Expect = 9e-94
 Identities = 186/512 (36%), Positives = 277/512 (54%), Gaps = 6/512 (1%)

Query: 32  VSAKTLVYCSEGSPENFYPGMNTTGTSFDVT-TQVYNTIVEFERGGTKVVPGLAEKWDIS 90
           + +   VYC E +P  F P +     + D    Q+YNT++  +      V  LA  W ++
Sbjct: 29  IRSSGFVYCGESAPTTFNPQLADNDITSDALGPQIYNTLLTIDPETHLPVASLASSWTVN 88

Query: 91  ADGTVYTFHLRKGVKWHTTSKSFKPTRDFNADDFIFMLERQWKESDPFFKVTSQNHSYFN 150
           + G  Y F LR  V + TT   F PTR  NADD +F   R    ++P+ KV    + +F 
Sbjct: 89  STGLEYVFKLRPDVAFQTTPW-FSPTRPLNADDVVFSFRRIIDPTNPYHKVGQTQYPWFK 147

Query: 151 DMGMPKLLKTVDRIDDYTVKIVLNQPEAPFLANLAMQYAGIQSKEYAIAMLKAGTPEKVD 210
            +    LL  V  +DD TVK VL++P+  FL+N+A  +A I S EYA  ++     EK+D
Sbjct: 148 GIDFQNLLVDVSALDDLTVKFVLSRPDNSFLSNIATSHAVILSLEYANQLIIDDEKEKLD 207

Query: 211 QDPIGTGPFYLVQYQKDAVIRFKAFPQYWGGKAKIDDLVFAITPDASVRWAKLQKGECHV 270
             P+GTGPFYL +Y    +IR K  PQYW G AK++ +VF I+   +   AKL + EC V
Sbjct: 208 NLPLGTGPFYLAEYHPRDLIRLKRHPQYWEGAAKVEQVVFDISQRGTGMLAKLLRNECDV 267

Query: 271 MPYPNPADLDAIRKDPNVQVLEQPGLNVGYLSYNTTKKPFDDVRVRKAINMAINKKAIID 330
           +  P  + L AI K+P++ +   P +NV +++ NT     +D RVRKA+N AIN++ I+D
Sbjct: 268 LNAPISSQLPAIEKNPDIVLQTTPAMNVAFIAVNTQHPALNDNRVRKALNFAINRQNILD 327

Query: 331 GVYLTTGVAAKNPIPPTMWSYNDAVKDDPYDPEAAKKLLAQAGYPDGFSTDLWAMPVQ-R 389
            VY  TG  A   +PPT W+Y        YD   A+ LL +AG+  G    + ++PV+ +
Sbjct: 328 SVYYGTGSIAFTILPPTSWAYQQDTAQIRYDRNYAQALLREAGFATGLELTM-SVPVEPK 386

Query: 390 PYNPNAKRIAELMQADLAKINVKAEIKSFEWGEYRKRLQAGEHQMGMLGWTGDNGDPDNF 449
            YNP+ ++ AEL+QA+LA I V   + S +  E ++        + + GWTGD GDPDNF
Sbjct: 387 AYNPSPRKTAELIQANLADIGVTLRLISEDRSERQELSIRNNIDLYLSGWTGDTGDPDNF 446

Query: 450 LYTLLGCASAKSASGSNISKFCYQPYEDLVVKAKSTVKQADRDALYKKAQVIFKEQAPWF 509
           L  LL C S  + +G N+S +C   ++ L+  A    K   R  LY +AQ I  ++ P  
Sbjct: 447 LRPLLSCDS--NRAGLNVSMWCDSDFDFLLDLALEANKPRYRLNLYHQAQNILNQEFPVI 504

Query: 510 TIAHAVQLKPVRKEVVDFKLSPFGRHTFYGVD 541
            +AH +Q     K +   ++SPF    F  V+
Sbjct: 505 PLAHGIQFTAYSKSLTGIRISPFNVQPFNTVE 536