Pairwise Alignments

Query, 543 a.a., Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) from Variovorax sp. SCN45

Subject, 531 a.a., periplasmic dipeptide-binding protein from Sinorhizobium meliloti 1021

 Score =  591 bits (1523), Expect = e-173
 Identities = 300/530 (56%), Positives = 381/530 (71%), Gaps = 10/530 (1%)

Query: 16  LLAPTAIAALTLACGAVSAKTLVYCSEGSPENFYPGMNTTGTSFDVTTQ-VYNTIVEFER 74
           LLA TAIA  TL  G   +KT V+CSEGSPE F PG+ T GT+FD     VY+ ++EF++
Sbjct: 7   LLAATAIA--TLMAGTAWSKTFVFCSEGSPEGFDPGLYTAGTTFDAAAHTVYSRLLEFKK 64

Query: 75  GGTKVVPGLAEKWDISADGTVYTFHLRKGVKWHTTSKSFKPTRDFNADDFIFMLERQWKE 134
           G T+  PGLAE W IS DG  YTF LR GVK+ TT + F PTR+ NADD IF +ERQWK 
Sbjct: 65  GTTETEPGLAESWTISDDGLEYTFKLRPGVKFQTT-EFFTPTRELNADDVIFSIERQWKS 123

Query: 135 SDPFFK-VTSQNHSYFNDMGMPKLLKTVDRIDDYTVKIVLNQPEAPFLANLAMQYAGIQS 193
             P+   VT  +  YF  MG+P+LL++V+++DD TVKI L + EAPFLANLAM +A I S
Sbjct: 124 DHPWHGYVTGGSWEYFAGMGLPELLESVEKVDDMTVKIKLKRKEAPFLANLAMPFASIMS 183

Query: 194 KEYAIAMLKAGTPEKVDQDPIGTGPFYLVQYQKDAVIRFKAFPQYWGGKAKIDDLVFAIT 253
           KEYA  +   G   +++Q P+GTGPF  V YQ+DAVIR+KA P +WGGK KIDDLVFAIT
Sbjct: 184 KEYADKLQAEGKMNQLNQMPLGTGPFAFVGYQQDAVIRYKAHPDFWGGKQKIDDLVFAIT 243

Query: 254 PDASVRWAKLQKGECHVMPYPNPADLDAIRKDPNVQVLEQPGLNVGYLSYNTTKKPFDDV 313
            DA+VR+ KLQ GECH+MPYPN AD++A++ DPN++V+EQ GLNV YL+YNTT+ PFD V
Sbjct: 244 TDAAVRFQKLQAGECHLMPYPNAADVEAMKADPNLKVMEQAGLNVAYLAYNTTQPPFDKV 303

Query: 314 RVRKAINMAINKKAIIDGVYLTTGVAAKNPIPPTMWSYNDAVKDDPYDPEAAKKLLAQAG 373
            VRKA+N AINK+AI+D V+      A NPIPPTMWSYN+ ++DD YDPEAAKK+L  AG
Sbjct: 304 EVRKALNKAINKQAIVDAVFQGQATPATNPIPPTMWSYNEHIEDDTYDPEAAKKMLEDAG 363

Query: 374 YPDGFSTDLWAMPVQRPYNPNAKRIAELMQADLAKINVKAEIKSFEWGEYRKRLQAGEHQ 433
             D  S  +WAMPV RPY  NA+R AELMQAD AK+ VK EI S+EW EY ++ +A +  
Sbjct: 364 VKD-LSMKVWAMPVARPYMLNARRAAELMQADFAKVGVKVEIVSYEWAEYLEKSKAKDRD 422

Query: 434 MG-MLGWTGDNGDPDNFLYTLLGCASAKSASGSNISKFCYQPYEDLVVKAKSTVKQADRD 492
              +LGWTGDNGDPDNFL TLLGC    +  G+N +++C + +++LV KAK     A+R 
Sbjct: 423 GAVILGWTGDNGDPDNFLDTLLGC---DAVGGNNRAQWCDKEFDELVTKAKEASDVAERT 479

Query: 493 ALYKKAQVIFKEQAPWFTIAHAVQLKPVRKEVVDFKLSPFGRHTFYGVDI 542
            LY++AQV+FK +APW T+ H++ + P+RK V  F  SP G   F GVDI
Sbjct: 480 KLYEEAQVVFKREAPWATLDHSLSIVPMRKNVEGFVQSPLGDFAFDGVDI 529