Pairwise Alignments

Query, 543 a.a., Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) from Variovorax sp. SCN45

Subject, 529 a.a., extracellular solute-binding protein, family 5 (NCBI) from Rhodospirillum rubrum S1H

 Score =  653 bits (1685), Expect = 0.0
 Identities = 320/533 (60%), Positives = 398/533 (74%), Gaps = 7/533 (1%)

Query: 12  RSLALLAPTAIAALTLACGAVSAKTLVYCSEGSPENFYPGMNTTGTSFDVTTQ-VYNTIV 70
           R + + A +A+  L +A     AKTLVYCSEGSPE F P   TTGT+FD T++ +++ +V
Sbjct: 2   RKIVIGAASAVI-LAMAASGAQAKTLVYCSEGSPEGFNPAFYTTGTTFDATSKNIFDKLV 60

Query: 71  EFERGGTKVVPGLAEKWDISADGTVYTFHLRKGVKWHTTSKSFKPTRDFNADDFIFMLER 130
            F+RG T++ PGLAE W++S DG  YTFHLRKGV +H  S  FKPTR FNADD I+  ER
Sbjct: 61  LFKRGTTEIEPGLAESWEVSPDGKTYTFHLRKGVTFHD-SDIFKPTRQFNADDVIWSFER 119

Query: 131 QWKESDPFFKVTSQNHSYFNDMGMPKLLKTVDRIDDYTVKIVLNQPEAPFLANLAMQYAG 190
           Q K+  P+  V+   + YF  M M  LL+ ++++DDYTV   L++PEAP LANLAM +A 
Sbjct: 120 QLKKDHPYHAVSGGTYDYFEGMSMNTLLEKIEKVDDYTVVFHLSRPEAPMLANLAMDFAS 179

Query: 191 IQSKEYAIAMLKAGTPEKVDQDPIGTGPFYLVQYQKDAVIRFKAFPQYWGGKAKIDDLVF 250
           I S EYA  M+KAGTPE VDQ PIGTGPF    YQKDA IR++A P YW GKA ID LVF
Sbjct: 180 IFSAEYADKMMKAGTPEVVDQKPIGTGPFMFRGYQKDAQIRYEANPTYWQGKAAIDRLVF 239

Query: 251 AITPDASVRWAKLQKGECHVMPYPNPADLDAIRKDPNVQVLEQPGLNVGYLSYNTTKKPF 310
            ITPDASVR+AKL+ GECHVMPYPNPADL+A++ D  V ++ Q GLNVGYL+YN  KKPF
Sbjct: 240 VITPDASVRYAKLKAGECHVMPYPNPADLEAMKTDKAVNLMHQEGLNVGYLAYNVEKKPF 299

Query: 311 DDVRVRKAINMAINKKAIIDGVYLTTGVAAKNPIPPTMWSYNDAVKDDPYDPEAAKKLLA 370
           DDVRVRKA+N+AI+KKAIID VY   G AA NPIPPT+WSYN AVKDD +DP AAKKLLA
Sbjct: 300 DDVRVRKALNLAIDKKAIIDAVYQGAGTAATNPIPPTIWSYNKAVKDDAFDPAAAKKLLA 359

Query: 371 QAGYPDGFSTDLWAMPVQRPYNPNAKRIAELMQADLAKINVKAEIKSFEWGEYRKRLQAG 430
           +AG  D   T +WAMPVQRPYNPNA+R+AE++QA+   + V AEI S+EWGEY KR +AG
Sbjct: 360 EAGVKD-LKTTIWAMPVQRPYNPNARRMAEILQANWKAVGVDAEITSYEWGEYLKRAKAG 418

Query: 431 EHQMGMLGWTGDNGDPDNFLYTLLGCASAKSASGSNISKFCYQPYEDLVVKAKSTVKQAD 490
           EH+  + GWTGDNGDPDNFL  LLGC    +  G+N +++C + +E+L+ KAK    Q +
Sbjct: 419 EHETALFGWTGDNGDPDNFLAVLLGC---DAIPGNNYARWCDKSFENLIQKAKIATSQEE 475

Query: 491 RDALYKKAQVIFKEQAPWFTIAHAVQLKPVRKEVVDFKLSPFGRHTFYGVDIK 543
           R  LY++AQVIFKEQAPW TIAH+V  +P+RKEV+D+K+ P G H FYGVD+K
Sbjct: 476 RVKLYEEAQVIFKEQAPWATIAHSVVYEPIRKEVIDYKIDPLGGHIFYGVDLK 528