Pairwise Alignments

Query, 559 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 557 a.a., long-chain-fatty-acid--CoA ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  604 bits (1558), Expect = e-177
 Identities = 307/559 (54%), Positives = 399/559 (71%), Gaps = 7/559 (1%)

Query: 3   DRPWLSSYPQGVPADIDASHYPSLVALMEESFSKYADRTAYSFMGKDISYGETDKQSKAF 62
           D+PW+   P+ VPA+I+   Y SL+ + E + +KYAD+ A+  MG  ++Y + +++S+AF
Sbjct: 2   DQPWIRHLPKDVPAEINVDQYSSLIDMFETAVAKYADQPAFINMGATLTYRKLEERSRAF 61

Query: 63  AAYLQG-LGLVKGDRVAAMMPNCPQYPIAVAAILRAGLILVNVNPLYTPRELEHQLKDSG 121
           AAYLQ  L L KGDRVA MMPN  QYPIA+  ILRAG+++VNVNPLYTPREL+HQL DSG
Sbjct: 62  AAYLQNELKLQKGDRVALMMPNLLQYPIALFGILRAGMVVVNVNPLYTPRELKHQLIDSG 121

Query: 122 AKAIIIMENFGTTLQQCIASTPIKHIVLASMGDRLGFLKGALVNYVVRNVKKLVPHFSLP 181
           AKAI+++ NF  TL++ +  TP+K +++  +GD L   K  LVN+VV+ +KKLVP + LP
Sbjct: 122 AKAIVVVSNFARTLEEVVDQTPVKSVIITGLGDLLSAPKRTLVNFVVKYIKKLVPKYDLP 181

Query: 182 GAVRFNDALDKGASGS-VKPVAIGPDDVAVLQYTGGTTGVSKGAVLLHRNVIANVLQSEA 240
            A+   + L +G     VKPV  G DD+A LQYTGGTTGVSKGA+L H NV+ANVLQ+  
Sbjct: 182 HALSMRETLSRGRRMQYVKPVITG-DDLAFLQYTGGTTGVSKGAMLTHSNVVANVLQANG 240

Query: 241 WNEPAMAKVPANEQPTGVCALPLYHIFAFTVGMMLSMRTGGKLILIPNPRDIPAVLKELS 300
              PA+     +     V ALPLYHIFA TV  +L +  G + +LI NPRDIP  + EL 
Sbjct: 241 AYSPALR----DGSEFVVTALPLYHIFALTVNCLLFLHKGSQNLLITNPRDIPGFVAELK 296

Query: 301 KHTIHSFPAVNTLFNGLANHPDFNTVNWKNLKISVGGGMAVQAAVAKLWLEKTGCPICEG 360
           K+   +   VNTLFN L N  DF+ +++  LK+S+GGGMAVQ AVA  W   T   + EG
Sbjct: 297 KYPFTALTGVNTLFNALVNSSDFSELDFSRLKLSIGGGMAVQKAVADKWQNITKTRLLEG 356

Query: 361 YGLSETSPSTTCNPTNSTAYTGTIGLPLPGTWLKLLDDEGNEVPLGERGEIAIKGPQVMA 420
           YGL+E SP  TC P N   Y G+IG P P T +++ DD GN +P GE GE+  KGPQ+M 
Sbjct: 357 YGLTEASPLLTCCPYNLDGYNGSIGFPAPSTLIQVRDDAGNVLPQGETGELFGKGPQIMK 416

Query: 421 GYWQRPDETAKVMTPDGYFKSGDIGVVDERGYFKVVDRKKDMILVSGFNVYPNEVEDVVA 480
           GYWQRP+ETAKV+  DG+  +GDIG +DE+G+F +VDRKKDMILVSGFNV+PNEVE+VVA
Sbjct: 417 GYWQRPEETAKVIDNDGWLATGDIGYMDEQGFFYIVDRKKDMILVSGFNVFPNEVEEVVA 476

Query: 481 LIPGVLECAAVGVPDEKTGEAVKLVIVKKDPSLTEAQVREYCRANLTGYKQPRIVEFRTE 540
           L P V+E AAVGVP++ +GE VK+ +VKKD SLT   + ++CR +LTGYK P++VEFR E
Sbjct: 477 LHPKVIEVAAVGVPNDASGELVKVFVVKKDKSLTAEDIIKHCRVHLTGYKVPKLVEFRDE 536

Query: 541 MPKTPVGKILRRELRDSKK 559
           +PKT VGKILRRELRD  K
Sbjct: 537 LPKTNVGKILRRELRDEVK 555