Pairwise Alignments

Query, 207 a.a., FIG01964566: Predicted membrane protein, hemolysin III homolog from Variovorax sp. SCN45

Subject, 236 a.a., hemolysin III family channel protein (RefSeq) from Shewanella loihica PV-4

 Score =  125 bits (313), Expect = 8e-34
 Identities = 80/200 (40%), Positives = 108/200 (54%), Gaps = 6/200 (3%)

Query: 5   ERLNGYSHLLGLLLALPATALLLAKTVPTGDPARIAGALVFSLSAVALYGASTLFHSTRG 64
           E  N  SH LG++  + A A  L K        ++ G  ++ LS + L+  STL+HS   
Sbjct: 36  ELANALSHGLGVIAGILALAFSLHKGWDRLTNLQLGGLALYCLSIILLFLCSTLYHSVSA 95

Query: 65  -RLKRMWERADHCAIYLLIAGTYTPFALVTLHGKWGWLLLSAIWGAALFGI-WRELRPPK 122
            +LK   + ADHCAIYLLIAGTYTP   + L       +L AIW  AL GI ++ L   +
Sbjct: 96  PKLKHKLKIADHCAIYLLIAGTYTPLMQILLDSVEADAILIAIWSLALGGILFKTLFIHR 155

Query: 123 PGASAKPSLPLYIGMGWLGVLAAVPLAARLDSAGLAWLLIGGVLYTVGTIFYRNRQGFRH 182
                  SL LY+ MGWL V+    L A +   G   LL GG+ Y+ G IFY  ++   +
Sbjct: 156 FKIF---SLVLYLVMGWLCVIVMKQLLAAMTPLGFQLLLAGGIFYSTGVIFYVGKR-IPY 211

Query: 183 AHGAWHLFVLAGTISHYIAV 202
            H  WHLFVLAG +SH++ V
Sbjct: 212 NHAIWHLFVLAGALSHFLCV 231