Pairwise Alignments

Query, 207 a.a., FIG01964566: Predicted membrane protein, hemolysin III homolog from Variovorax sp. SCN45

Subject, 217 a.a., channel protein, hemolysin III family subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  133 bits (334), Expect = 3e-36
 Identities = 76/199 (38%), Positives = 108/199 (54%), Gaps = 4/199 (2%)

Query: 5   ERLNGYSHLLGLLLALPATALLLAKTVPTGDPARIAGALVFSLSAVALYGASTLFHSTRG 64
           E  N  SH LG++        +L K V      ++ G +++  S + L+ +STL+HS   
Sbjct: 17  EIANSISHGLGVIAGAVGLIFMLLKGVDHLSSIQLTGVIIYGASLILLFLSSTLYHSVTH 76

Query: 65  R-LKRMWERADHCAIYLLIAGTYTPFALVTLHGKWGWLLLSAIWGAALFGIWRELRPPKP 123
           R  K   +  DHCAIY LIAGTYTP  L++L G    ++L+AIW  A+ GI    +    
Sbjct: 77  RGWKHKLKIVDHCAIYCLIAGTYTPLMLISLQGNLSTIILTAIWSLAIGGIL--FKTLFI 134

Query: 124 GASAKPSLPLYIGMGWLGVLAAVPLAARLDSAGLAWLLIGGVLYTVGTIFYRNRQGFRHA 183
               K SL LY+ MGWL +     L A +   G   LL+GG+ YT+G IFY  ++   + 
Sbjct: 135 HRFKKLSLVLYLAMGWLCMTVIGDLTAAMSPLGFNLLLLGGLFYTLGVIFYVGKR-IPYN 193

Query: 184 HGAWHLFVLAGTISHYIAV 202
           H  WHLFVLAG +SH+  +
Sbjct: 194 HAIWHLFVLAGAMSHFFCI 212