Pairwise Alignments

Query, 804 a.a., DNA polymerase II (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 791 a.a., DNA polymerase elongation subunit (family B) from Pseudomonas stutzeri RCH2

 Score =  893 bits (2307), Expect = 0.0
 Identities = 438/784 (55%), Positives = 575/784 (73%), Gaps = 2/784 (0%)

Query: 21  QGFILTRHWRDASSGTEIEYWLATDEGPRKAVLRSQTSVAFVESRHRPALEAQLAAMPGM 80
           +GFILTRHWRD  +GTEI +WLATD+GPR+  +  Q SVAFV        E  L      
Sbjct: 10  RGFILTRHWRDTPAGTEISFWLATDDGPRQVCVPHQHSVAFVPEEQHALAEPLLRRERDA 69

Query: 81  QVRELELKTFNCQPVVGVYAKHYRQLGRLTRALQPQGVPVLEADVRPHDRYLMERFITAG 140
           ++R L L  F  +PV+G+Y + YR+L    R L+  GV V EAD+RP +RYLMERFITA 
Sbjct: 70  ELRPLALCDFRHRPVMGLYCRSYRRLLDCARLLRDAGVDVYEADIRPPERYLMERFITAP 129

Query: 141 VTVEEGRADGATIVDCRLKPAPEFRPVLKMVSLDIETSQDEALYSIALDGLQDRVVFMLG 200
           V+  +  A G  +V+ +LKPA ++RP L++VSLDIET+    LYSIAL+G   R V+MLG
Sbjct: 130 VSFTDAPA-GRNLVNTQLKPASDYRPQLRLVSLDIETTARGDLYSIALEGCGQRQVYMLG 188

Query: 201 EAPPGPGEPMDFSLVYCPTRKAMVESLNDWFERNDPDVVIGWNVIQFDLRVLQKTANDCG 260
                 G  +DF+L YC +R+ ++E LN WF  +DPD +IGWN++QFDLRVL + +    
Sbjct: 189 PEN-AQGTAVDFALEYCESRRELLERLNAWFAAHDPDAIIGWNLVQFDLRVLHEHSQRLQ 247

Query: 261 MQLLLGRERRPIEWRTHPGKQGYLFAPTPGRVIIDGIDALKAAMWSFPSFSLETVSQALL 320
           + L LGR    +EWR H G+  + FA T GR+IIDGI+AL++A WSFPSFSLE V+Q LL
Sbjct: 248 VPLRLGRGGEEMEWREHGGRGNHFFAATAGRLIIDGIEALRSATWSFPSFSLENVAQTLL 307

Query: 321 GEGKAIGDEYDKMAEIERRYQEDKPALALYNIRDCELVLRIFDKAKLLQFVMERAQTTGL 380
           GEGKAI + Y +MAEI+R + +DKPALA YN++DCELV RIF   +LL F++ERA  TGL
Sbjct: 308 GEGKAIDNPYQRMAEIDRMFAQDKPALARYNLKDCELVTRIFAHTELLTFLLERATVTGL 367

Query: 381 QADHFGGSIAAFSHHYLPRMHRLGYVAPNVGEIASKAFPGGYVMDSKPGFYDSVVVLDYK 440
            AD  GGS+AAF H Y+P MHR G+VAPN+GE  ++A PGG+VM+S+PG Y+SV+VLDYK
Sbjct: 368 AADRSGGSVAAFEHLYMPLMHRQGFVAPNLGERQAEASPGGFVMNSQPGLYESVLVLDYK 427

Query: 441 SLYPSIIRTFLVDPVGLVEGTHAGDPAMVVKGPQGTVFSRERHCLPEIVTTLWRARDEAK 500
           SLYPSIIRTFL+DPVGL+EG    +    + G +G  FSR RHCLP IV  +W  R+ AK
Sbjct: 428 SLYPSIIRTFLIDPVGLIEGLRHPNDESSIPGFRGARFSRTRHCLPAIVERVWEGRETAK 487

Query: 501 RVGNEPLSQALKLLMNSFAGVLGAADCRFFNPKLVSAVTLRGHEMMKLTREFVQSRGYEV 560
           R  N+PLSQALK++MN+F GVLG++ CRFF+ +L S++TLRGHE+M+ TRE ++++G+ V
Sbjct: 488 REHNKPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSITLRGHEIMRRTRELIEAQGHAV 547

Query: 561 IYGDTDSIFVWLKRTHTNEEAHAVAANLVRDINDWWTGSLRDEQGLDNFLEIEFDTHYRK 620
           IYGDTDS FVWL++ H++ EA  +   LV+ INDWW   L+ E GL + LE++++TH+R+
Sbjct: 548 IYGDTDSTFVWLRKAHSDGEAACIGRELVQHINDWWCEHLQVEYGLASALELQYETHFRR 607

Query: 621 FFMPTIRGSDVGSKKRYAGLSVDAKGKEEMVYRGLEMARSDWTPLARQFQEGLLSRIFQG 680
           F MPTIRG++ GSKKRYAGL     G + MV++GLE  R+DW+PLA++FQ+ L  RIF  
Sbjct: 608 FLMPTIRGAEEGSKKRYAGLVTRPDGSDGMVFKGLETVRTDWSPLAQRFQQELYQRIFHR 667

Query: 681 EPYKEFVSDYAQSTLAGEKDDLLIYRKRLRHRLDAYLVNVPPQVRAARIADEYNARIGRP 740
           +P++++V +Y + TLAGE DDLLIYRKRLR RLD Y  NVPP VRAAR+ADE+N R GRP
Sbjct: 668 QPHRDYVREYVRRTLAGELDDLLIYRKRLRRRLDDYQRNVPPHVRAARLADEFNERQGRP 727

Query: 741 MQYQSGGWIRYVMTRNGPEPLETRHSRIDYEHYLSKQLQPIADAILQPVGESFTALTTAQ 800
            QYQ+GGWI Y++T  GPEPLETR S IDY+HY+++QLQP+ADAIL  VG+ F +L   Q
Sbjct: 728 RQYQNGGWISYLITVAGPEPLETRSSVIDYDHYVTRQLQPVADAILPFVGDDFASLVDGQ 787

Query: 801 QHLF 804
             LF
Sbjct: 788 LGLF 791