Pairwise Alignments

Query, 804 a.a., DNA polymerase II (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 787 a.a., DNA polymerase II from Vibrio cholerae E7946 ATCC 55056

 Score =  723 bits (1865), Expect = 0.0
 Identities = 385/796 (48%), Positives = 525/796 (65%), Gaps = 25/796 (3%)

Query: 21  QGFILTRHWRDASSGTEIEYWLATDEGPRKAVLRSQTSVAFVE---SRHRPALEAQLAAM 77
           QGF+LTRH RD +  T+IE WLAT  GP +  +R +  V F+E   S+    + A+L+  
Sbjct: 5   QGFVLTRHARDVAGQTQIELWLATPSGPTQLTIRGERPVFFIEQSASQEVMRIAAELSIT 64

Query: 78  PGMQVRELELKTFNCQPVVGVYAKHYRQLGRLTRALQPQGVPVLEADVRPHDRYLMERFI 137
           P +    L L++F  QP+   Y    R    L   L    + +LEAD+R  DR+LMERFI
Sbjct: 65  PSLA--PLSLRSFAGQPLAACYCNTIRDSQILAEKLAQADMLILEADIRLADRFLMERFI 122

Query: 138 TA-----GVTVEEGRADGATIVDCRLKPAPEFRPVLKMVSLDIETSQDEALYSIALDGLQ 192
                  G   + G         CR     ++ P L MVSLDIE S+   LYSI LD   
Sbjct: 123 QGSIEFTGQITDFGHYRQVQQAKCR---QGDYLPTLNMVSLDIECSEKGLLYSIGLDSPM 179

Query: 193 DRVVFMLGEAPPGPGEPMDFSLVYCPTRKAMVESLNDWFERNDPDVVIGWNVIQFDLRVL 252
           D  V M+G+      EP +  + +      ++++L  WFE+ DPDV+IGW+V+ FD R+L
Sbjct: 180 DSRVIMIGQP-----EPAETPIQWVEDEYQLLKALIAWFEQFDPDVIIGWSVVDFDFRLL 234

Query: 253 QKTANDCGMQLLLGRERRPIEWRT-HPGKQGYLFAPTPGRVIIDGIDALKAAMWSFPSFS 311
            K A    ++L +GR ++P  +RT    +QG++    PGRV++DGID LK A + F S+S
Sbjct: 235 HKRAEFHKLKLTIGRAQQPSFFRTASQTQQGFI--SIPGRVVLDGIDTLKTATYHFRSWS 292

Query: 312 LETVSQALLGEGKAIGDEYDKMAEIERRYQEDKPALALYNIRDCELVLRIFDKAKLLQFV 371
           LE+VSQ LLGEGKAI + +D+M EI + ++ DKP+LA YN++DC LV +IF    LL F 
Sbjct: 293 LESVSQELLGEGKAIHNVHDRMDEINQMFRHDKPSLARYNLQDCVLVNKIFAATHLLDFA 352

Query: 372 MERAQTTGLQADHFGGSIAAFSHHYLPRMHRLGYVAPNVGEIASKAFPGGYVMDSKPGFY 431
           ++R++ TG++ D  GGS+AAF++ YLP++HR GYVAPN+      A PGGYVMDS PG Y
Sbjct: 353 IQRSRLTGVELDRIGGSVAAFTNLYLPQLHRAGYVAPNLQPENWVASPGGYVMDSIPGLY 412

Query: 432 DSVVVLDYKSLYPSIIRTFLVDPVGLVEGTH--AGDPA-MVVKGPQGTVFSRERHCLPEI 488
           DSV+VLD+KSLYPSIIR+FL+DP+GL+EG     G  A   V G +G  F R +H LPE+
Sbjct: 413 DSVLVLDFKSLYPSIIRSFLIDPLGLIEGLKLPIGKQADHAVPGFRGGQFHRTKHFLPEM 472

Query: 489 VTTLWRARDEAKRVGNEPLSQALKLLMNSFAGVLGAADCRFFNPKLVSAVTLRGHEMMKL 548
           +  LW ARDEAKR   +  SQA+K++MNSF GVLG++ CRFF+ +L S++T+RGHE+M  
Sbjct: 473 IEKLWAARDEAKRNQEKAFSQAIKIIMNSFYGVLGSSGCRFFDARLASSITMRGHEIMIQ 532

Query: 549 TREFVQSRGYEVIYGDTDSIFVWLKRTHTNEEAHAVAANLVRDINDWWTGSLRDEQGLDN 608
           T+  +++RGY+VIYGDTDS FV L   ++ +EA  +   LVR+IN WWT  L+ E  L +
Sbjct: 533 TKRLIEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTS 592

Query: 609 FLEIEFDTHYRKFFMPTIRGSDVGSKKRYAGLSVDAKGKEEMVYRGLEMARSDWTPLARQ 668
            LE+E++THYR+F MPTIRGS+ GSKKRYAGL  D    E+++++GLE AR+DWTPLA++
Sbjct: 593 ILELEYETHYRRFLMPTIRGSETGSKKRYAGLKGDG-DNEQLIFKGLESARTDWTPLAQR 651

Query: 669 FQEGLLSRIFQGEPYKEFVSDYAQSTLAGEKDDLLIYRKRLRHRLDAYLVNVPPQVRAAR 728
           FQ  L   IF G+  + ++    + TLAG+ DD L+Y+KRLR RL  Y  NVPPQVRAAR
Sbjct: 652 FQHQLYQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQKRLRRRLHEYQKNVPPQVRAAR 711

Query: 729 IADEYNARIGRPMQYQSGGWIRYVMTRNGPEPLETRHSRIDYEHYLSKQLQPIADAILQP 788
           +AD+ NA++GRP+QYQ  G I YV+T NGPEP E   S IDY+HY+ KQL+P+ADAIL  
Sbjct: 712 MADDINAKLGRPLQYQYRGTIEYVITVNGPEPKEYSKSPIDYQHYIDKQLKPVADAILPF 771

Query: 789 VGESFTALTTAQQHLF 804
           +G+ F  L   Q  LF
Sbjct: 772 IGKQFDELIAPQLGLF 787