Pairwise Alignments

Query, 804 a.a., DNA polymerase II (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 784 a.a., DNA-directed DNA polymerase from Methanococcus maripaludis S2

 Score =  118 bits (295), Expect = 1e-30
 Identities = 139/612 (22%), Positives = 262/612 (42%), Gaps = 93/612 (15%)

Query: 221 KAMVESLNDWFERNDPDVVIGWNVIQFDLRVLQKTANDCGMQLLLGRERRPIEWRTHPGK 280
           K ++E L ++      D++  +N   FD   L+K A   G++L LG+    I+  T  G 
Sbjct: 204 KRIIEILKEY------DIIYTYNGDNFDFPYLKKRAESFGLELKLGKNDEKIKI-TKGGM 256

Query: 281 QGYLFAPTPGRVIIDGIDALKAAMWSFPSFSLETVSQALLGEGKA-IGDEYDKMAEIERR 339
               + P  GRV ID +  +   + +   + LE V++AL    K  +G E      I + 
Sbjct: 257 NSKSYIP--GRVHID-LYPIARRLLNLTKYRLENVTEALFDVKKVDVGHE-----NIPKM 308

Query: 340 YQEDKPALALYNIRDCELVLRIFDKAKLLQFVMERAQTTGLQADHFGGSIAAFSHHYLPR 399
           +      L  Y+ +D     RI ++   L+ +  R     L   +   S     +  L  
Sbjct: 309 WDNLDETLVEYSHQDAYYTQRIGEQFLPLEIMFSRVVNQSLYDINRMSSSQMVEYLLLKN 368

Query: 400 MHRLGYVAPN--VGEIASK----AFPGGYVMDSKPGFYDSVVVLDYKSLYPSIIRTFLVD 453
            +++G +APN   G+   K    ++ GGYV +   G ++ +V +D+ SLYPSII +  + 
Sbjct: 369 SYKMGVIAPNRPSGKEYQKRIRSSYEGGYVKEPLKGIHEDIVSMDFLSLYPSIIMSHNLS 428

Query: 454 PVGLVEGTHAGDPAMVVKGPQGTVFSRERHC------LPEIVTTLWRARDEAKRVGNEPL 507
           P   ++ T   D     +  +       + C      +P+ +  L   R + K+V  E  
Sbjct: 429 P-ETIDCTCCSDE----ENGENEEILGHKFCKKSIGIIPKTLMDLINRRKKVKKVLREKA 483

Query: 508 ---------------SQALKLLMNSFAGVLGAADCRFFNPKLVSAVTLRGHEMMKLTREF 552
                           +++K+L NS  G L     R+++       T  G + ++ T E 
Sbjct: 484 EKGEFDEEYQILDYEQRSIKVLANSHYGYLAFPMARWYSRDCAEITTHLGRQYIQKTIEE 543

Query: 553 VQSRGYEVIYGDTDSIF-VWL--KRTHTNEEAHAVAANLVRDINDWWTGSLRDEQGLDNF 609
            ++ G++VIY DTD  +  W   K   +  E        +++IN+   G           
Sbjct: 544 AENFGFKVIYADTDGFYSKWADDKEKLSKYELLEKTREFLKNINNTLPGE---------- 593

Query: 610 LEIEFDTHYRKFFMPTIRGSDVGSKKRYAGLSVDAKGKEEMVYRGLEMARSDWTPLARQF 669
           +E+EF+ ++++    T        KK+YA +  +    E++  +GLE+ R DW+ +++  
Sbjct: 594 MELEFEGYFKRGIFVT--------KKKYALIDEN----EKITVKGLEVVRRDWSNVSKNT 641

Query: 670 QEGLLSRIFQG---EPYKEFVSDYAQSTLAGE--KDDLLIYRKRLRHRLDAYLVNVPPQV 724
           Q+ +L+ + +    E  K+ + D  +    G+   +DLLI+  +L  R++ Y    P   
Sbjct: 642 QKNVLNALLKEGSVENAKKVIQDTIKELKDGKVNNEDLLIH-TQLTKRIEDYKTTAPHVE 700

Query: 725 RAARIADEYNARIGRPMQYQSGGWIRYVMTRNGPEPLETR------HSRIDYEHYLSKQL 778
            A +I    N       +  +G  I Y++T +G + +  R          D  +Y+  Q+
Sbjct: 701 VAKKILKSGN-------RVNTGDVISYIIT-SGNKSISERAEILENAKNYDTNYYIENQI 752

Query: 779 QPIADAILQPVG 790
            P    +++ +G
Sbjct: 753 LPPVIRLMEALG 764