Pairwise Alignments

Query, 264 a.a., Hydroxymethylpyrimidine ABC transporter, transmembrane component from Variovorax sp. SCN45

Subject, 281 a.a., aliphatic sulfonate ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  122 bits (307), Expect = 6e-33
 Identities = 76/257 (29%), Positives = 128/257 (49%), Gaps = 4/257 (1%)

Query: 8   RPGRVARGWGVVAAQVAAALALLAAWEGAVRAGAVSALYLPAPSAIFESFVPMLMRGQLL 67
           R G  A  W    ++    +A LA W+ A  AG ++    P+  AI  +    +  G LL
Sbjct: 27  RSGAAAGSW---LSRYGLLIAFLALWQAASTAGWINPAVFPSVGAILSALWTGISGGALL 83

Query: 68  HHTGVTLAEFAVGYAAAVVAGIGFGVLLVLTPAAERFAQPFVAALMSVPKVAIVPLLALW 127
               ++L      +  AVV  I  G+L+    A E    P +        +A+ P+  L 
Sbjct: 84  DDIAISLQRSGTAFVGAVVLAIPLGLLMGQVRAIENALDPVLQLFRQTSALALYPVFILL 143

Query: 128 LGIGFSHKVAIVFLFSVFQILYSTIAGIKQTRREHLKVARAFRASTLQTVWKVILPSAVP 187
           LG+G + KV ++F  ++F +L STI+G+K+   + +++AR + AS L    +V+LP AVP
Sbjct: 144 LGLGEASKVFVIFWATLFPLLLSTISGVKEVDSKLIEMARVYGASRLTVFRRVVLPGAVP 203

Query: 188 TIFAALRVSASVGLVGALFAEMLSSKEGLGNLITRSTASLDTAETFALIVLVTVLAVAMI 247
           +IF  LR+SA+  L+  + +EM+ + +G+G  +  +  +      FA I ++  L +   
Sbjct: 204 SIFVGLRLSATTALLLLIASEMIGANKGIGFQVMNAQYNFQIPLMFAAIFILAGLGLVSN 263

Query: 248 AALDLLERLLFLRWRPA 264
            AL   +R L  RW  A
Sbjct: 264 YALVFAQRRL-CRWSDA 279