Pairwise Alignments

Query, 345 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 328 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  187 bits (474), Expect = 4e-52
 Identities = 128/338 (37%), Positives = 177/338 (52%), Gaps = 18/338 (5%)

Query: 9   LAGRVAARMLAALPVLAGAVVFTFLLTHVLPGDPAAFLAS-GPSAGPEEIAQIRARMGLD 67
           +A  +   +L A+P + G V+  F L  + PGD A  LA    SA  E +A +RAR GLD
Sbjct: 7   IARTLRRTLLQAVPTILGIVILNFFLLQLAPGDAADVLAGEAGSATEESVAALRARFGLD 66

Query: 68  QPLPVQLWHYLAALAQGDWGQSHTTGQPVWTDLRQRLPATLELTFVAFTLTLAVALPLGA 127
            P+  QL  YL  LAQ   G S   G PV   + QRLP TL L  VA  + + + + LG+
Sbjct: 67  SPVLEQLATYLGNLAQFSLGFSPRYGMPVADLIAQRLPGTLTLMAVALFIAILLGVVLGS 126

Query: 128 AAALRPRSIWDRACTLLTVGGSCMPTFVIALLLVYVFYFLLGWAPEPTGRIDAMLAPPPA 187
             A     I DR  ++ ++    +P+F I L+L+ +F   LGW P               
Sbjct: 127 LMASFAGRIPDRLLSIFSLLFYSIPSFWIGLMLIVLFSVKLGWLPS-------------- 172

Query: 188 VTGFLLVDSLLAGRADAFASAAGRLLLPAVAMALFSLAPLARLMRASLLGVLRSDPVRTA 247
             G   + S L G   A    A  ++LPA ++ALF +A  ARL RA++L V   D VRTA
Sbjct: 173 -GGAATIGSQLKG-FPALLDKARYMVLPATSLALFYVAIYARLTRAAMLEVKNHDFVRTA 230

Query: 248 RALGLPRRAVLA-SALHLALLPVVTGAGMVFSYMLSANVVIEKVFAWPGIGSYALDALLA 306
            A GL    V A   L  AL+P+ T AGM    ML   VV+E V++WPG+G  A +A++ 
Sbjct: 231 YAKGLTPFGVTARHILRNALIPITTMAGMHIGGMLGGAVVVETVYSWPGLGRLAFEAVMG 290

Query: 307 SDHAPLQGFVLLVALLFVGVNLGVDLLHGRIDPRAGSQ 344
            D   L G +LL +LL +  N  VDL+H  +DPR G++
Sbjct: 291 RDFTVLLGILLLSSLLVIIANAAVDLVHAWLDPRIGAR 328