Pairwise Alignments

Query, 345 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 311 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  177 bits (448), Expect = 4e-49
 Identities = 116/328 (35%), Positives = 172/328 (52%), Gaps = 31/328 (9%)

Query: 16  RMLAALPVLAGAVVFTFLLTHVLPGDPAAFL-ASGP-SAGPEEIAQIRARMGLDQPLPVQ 73
           R+L  +P +    +  F++  V+PG  AA L A G  +A P+ IA++    GL++PL  +
Sbjct: 8   RVLQIIPTVVVVALLIFVIFSVVPGTFAASLFADGRRAADPQMIARLNEEFGLNKPLMER 67

Query: 74  LWHYLAALAQGDWGQSHTTGQPVWTDLRQRLPATLELTFVAFTLTLAVALPLGAAAALRP 133
              Y+  LAQ D G S  T QPV   +  R+ A+L+L   A    L +++PLG  AALRP
Sbjct: 68  FVTYVTDLAQFDLGTSFRTRQPVIDLINDRMWASLQLAIAAMIFALVISVPLGFVAALRP 127

Query: 134 RSIWDRACTLLTVGGSCMPTFVIALLLVYVFYFLLGWAPEPTGRIDAMLAPPPAVTGFLL 193
            S+ D    +  V G  MP F + LL++Y+F   L W P                     
Sbjct: 128 GSVLDTVTMIGAVSGLSMPQFWLGLLMMYLFALQLNWLPS-------------------- 167

Query: 194 VDSLLAGRADAFASAAGRLLLPAVAMALFSLAPLARLMRASLLGVLRSDPVRTARALGLP 253
                 G  D    +   L+LPAV + +  LA LAR  RA +L VL +D +RTA + G+ 
Sbjct: 168 -----FGYGDG---SFRNLILPAVTLGVTPLALLARTTRAGVLDVLNADFIRTAHSKGMS 219

Query: 254 RRAVLA-SALHLALLPVVTGAGMVFSYMLSANVVIEKVFAWPGIGSYALDALLASDHAPL 312
              V+       AL+ +VT  G+ F  ++   VVIEK+FAWPGIGS  +D++ + D   +
Sbjct: 220 EAKVVRWHVARNALVLIVTTVGLQFGSLIGQAVVIEKLFAWPGIGSLLVDSVASRDIPVV 279

Query: 313 QGFVLLVALLFVGVNLGVDLLHGRIDPR 340
           QG +L++ L F+ +N  VDL++  IDPR
Sbjct: 280 QGTILVIVLWFLVINTAVDLIYAAIDPR 307