Pairwise Alignments

Query, 532 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  130 bits (328), Expect = 9e-35
 Identities = 139/538 (25%), Positives = 219/538 (40%), Gaps = 57/538 (10%)

Query: 12  AIATTGLGLPLSALAQSRKETVRVLAEGAPNSQDPHGEGVSRESLGLFTNVYDRLINFDR 71
           A+A    GL   A+A      + V  +  P S DPH E +S  +L L   V+D LI F +
Sbjct: 9   ALALIAAGLSFGAMAAD----ITVAYDADPVSMDPH-EQLSGGTLQLSHMVFDPLIRFTQ 63

Query: 72  VQVSPGVFKYDYGRFRGELAESFEQSADGRTLTFRLRRDATFHDGKPVTASDVKWSLDRA 131
                         F   LAES+ Q  D  T+ F LR+   FH G   TA DV W+ +R 
Sbjct: 64  KM-----------EFEPRLAESW-QRVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRL 111

Query: 132 VSLPASKRQLATGSLENPSQFSVVDAHTFRI----TLPRADR---YTLPNLALFFASVLN 184
                 K     G  E     + VD +T  I    T P  +    Y  P  + F+     
Sbjct: 112 KESADFK-----GIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTA 166

Query: 185 AELARAHATA-ADPWAAEWVKANSAGGGAYRVENLTPGQQVIYARFHN-WKSGALPQVRR 242
               +A      + +A+E    N +G G + V     G ++ + R  N W   +   V +
Sbjct: 167 DGKNKAEIVKHGNSFASE----NISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDK 222

Query: 243 AVFQVVPSASNRVAALLKGDADVALQLPPKDLDALTDTTRAKVVSVPVTTSFRFVAFNTQ 302
               V+   + RVAALL G  D+   + P D   + D     + ++P T    F      
Sbjct: 223 LTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNS 282

Query: 303 AKPFDDVRVRQAIAYALPYTSLLRGANLGRGEPLYGARSAKPTGSRFPQPYPYETQLLRA 362
                DVRVRQAI YA+    ++    + +G     A+ +    + + +       L +A
Sbjct: 283 NPALKDVRVRQAIVYAINNEGIV--DKVMKGAATTAAQQSPVGYAGYNENLKPRFDLNKA 340

Query: 363 RELLAQAGLAKGFKTSF----SYNVGDATLAEPAALLIQEALGKIGIELSIEKVPGAQWG 418
           +EL+ +AG  KGF  +     +  V D  +A+ A+ +    L KIGI++ ++ +P AQ+ 
Sbjct: 341 KELMKEAGYEKGFNLTMIAPNNRYVNDEKIAQAASAM----LSKIGIKVDLKTMPKAQYW 396

Query: 419 TLQTEKKLPFFI------DSSSAWFNDPDYFFRIFFQGDWRWNFGSFKNDELAKLVDQAR 472
               +      +         SA F +     R    G  ++N G + N E+ KLV+ A 
Sbjct: 397 PEFDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAAN 456

Query: 473 WETDRAKYDRAIQRAIEIAFEQVPLVPL------WLPSFEAALQPDLQGFTYYIHGQV 524
            ETD  K    +++  EI + +   VPL      W       + P + G  +   G +
Sbjct: 457 EETDLEKRSTMLKKVEEILYNEAAFVPLHFQDPSWAAKNTLDIAPIINGMDFPYFGDL 514