Pairwise Alignments

Query, 447 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

 Score = 57.4 bits (137), Expect = 6e-13
 Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 15/220 (6%)

Query: 125 IGFANASSSSPWRVAMARSLMAAAQRQRDVVSRVMVRDAHDDPRRQIEQLAEMREERMDL 184
           +GF+   S S WR + + ++ A A +QR +   +   DA      QI+ +     + +D 
Sbjct: 25  VGFSQVGSESGWRTSFSEAVKAEA-KQRGI--DLKFADAQQKQENQIKAVRSFIAQGVDA 81

Query: 185 CILSAAASD--HPELLAAVRGLGAQGIPVIGVDRICGEPEDMVSFVT--ASDVL-VGRMS 239
            I++        P L  A R      IPV+ VDR     +D + F+T  ASD    GR  
Sbjct: 82  IIIAPVVETGWKPVLKEAKRA----KIPVVIVDRNIKVDDDSL-FLTRIASDFSEEGRKI 136

Query: 240 ALWLVEYLGGRGRILMLCGREDASPCRLRLQAAMEILGLHPKIEVVAIEFTNWEASLGHE 299
             WL++   G   I  L G   A+    R     +++  +P  ++V  +   +  + G E
Sbjct: 137 GQWLMDKTQGNCDIAELQGTVGATAAIDRAAGFNQVIANYPNAKIVRSQTGEFTRAKGKE 196

Query: 300 IVQRHLAA--GTKFDGVWCDSGLQGVGSLRAFTEAGYKRG 337
           +++  L A  G     VW  +    +G+++A  EAG K G
Sbjct: 197 VMEGFLKAQNGQPLCAVWSHNDEMALGAVQAIKEAGLKPG 236