Pairwise Alignments

Query, 476 a.a., ATP-dependent 23S rRNA helicase DbpA from Variovorax sp. SCN45

Subject, 557 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N2E2

 Score =  272 bits (695), Expect = 2e-77
 Identities = 164/454 (36%), Positives = 255/454 (56%), Gaps = 24/454 (5%)

Query: 11  TPADNGFAALALSPQMLANLTQLGYTQMTPIQAAALPPALLGKDLIAQAKTGSGKTAAFA 70
           T    GFAA  L+P +LA +T  GY + + IQ  ++P  + G D+I QA+TG+GKTAAFA
Sbjct: 2   TQETGGFAAFNLNPNILAAVTATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFA 61

Query: 71  LALLANLNARRFAIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQVAS 130
           L +L  ++  +   QA++L PTRELA QV T     ++    + VV + GG  +  Q+ +
Sbjct: 62  LPILHRIDPAKREPQALILAPTRELALQVATAFETYSKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 131 LEHGAHIVVGTPGRIMDHLERENLDLSALNTLVLDEADRMLDMGFFDDIVTVARQCPKER 190
           + +GA IVV TPGR+ DHL R+   L+ +N LVLDEAD ML +GF DD+  + +  P  R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATR 181

Query: 191 QTLLFSATYPEGIAKLAQQFMKNPEQITVQAQHEG-SKIRQRWYQIKDSERLHAVSLLLD 249
           QT+LFSAT P+ I  +A++ +++P+ + +Q + +  + I Q    +   ++  AV  LL+
Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241

Query: 250 HFRPVSTLAFCNTKQQCRDLVDVLQAQGFSALALFGELEQRERDQVLVQFANRSCSVLVA 309
                + + F  TKQ   DL   L+A+G+ A AL G++ Q +R++V+    +    ++VA
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 310 TDVAARGLDISQLEAVINVDVTPDSEIHIHRVGRTGRVGQQGAAEGLALNLASMNEMGFV 369
           TDVAARGLD+ ++  V NVD+  D E ++HR+GRTGR G+    EG AL L +  E   +
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGR----EGRALLLVTPRERRML 357

Query: 370 GKIEQLQGRESEWHELSELTPGKGSPLKPPMATLQIVGGRKEKIRAGDVLGALTGDCGYA 429
             IE++ G++     L +      + +K    +L  +    E    GD+L  LT D G +
Sbjct: 358 QVIERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTH-GDLLDRLTADIGCS 416

Query: 430 KDQVGKINVNEFSTYVAVDRAIAAEAARKLSSGR 463
                              RA+AA   RK ++G+
Sbjct: 417 ------------------PRALAAALLRKATNGQ 432



 Score = 40.0 bits (92), Expect = 2e-07
 Identities = 23/78 (29%), Positives = 40/78 (51%)

Query: 395 PLKPPMATLQIVGGRKEKIRAGDVLGALTGDCGYAKDQVGKINVNEFSTYVAVDRAIAAE 454
           PL    A  +   G ++ I A ++LGA+  + G A++ +G+I V +  + V +      +
Sbjct: 475 PLAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEK 534

Query: 455 AARKLSSGRVKGKSVKVR 472
              KL   RV GK +K+R
Sbjct: 535 LLTKLKDTRVAGKQLKLR 552