Pairwise Alignments

Query, 476 a.a., ATP-dependent 23S rRNA helicase DbpA from Variovorax sp. SCN45

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  281 bits (718), Expect = 6e-80
 Identities = 170/452 (37%), Positives = 262/452 (57%), Gaps = 18/452 (3%)

Query: 17  FAALALSPQMLANLTQLGYTQMTPIQAAALPPALLGKDLIAQAKTGSGKTAAFALALLAN 76
           F+ LAL+  +L+ LT++G+   TPIQAAA+P  L G+D + +A+TG+GKTAAF+L LL  
Sbjct: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87

Query: 77  LNARRFAIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQVASLEHGAH 136
           LN  ++  QA+V+ PTRELA QV  EI+ L +  + +KV+ + GG ++  Q+ +L+ GAH
Sbjct: 88  LNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAH 147

Query: 137 IVVGTPGRIMDHLERENLDLSALNTLVLDEADRMLDMGFFDDIVTVARQCPKERQTLLFS 196
           IVVGTPGR+ D + R+ L L   +T +LDEAD ML MGF DD+  +  Q P+  Q +LFS
Sbjct: 148 IVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 207

Query: 197 ATYPEGIAKLAQQFMKNPEQITVQAQHEG-SKIRQRWYQIKDSERLHAVSLLLDHFRPVS 255
           AT P  + ++ ++F++NPE + V   ++  +K+ Q+++ +K  E+  A++ LL+     +
Sbjct: 208 ATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDA 267

Query: 256 TLAFCNTKQQCRDLVDVLQAQGFSALALFGELEQRERDQVLVQFANRSCSVLVATDVAAR 315
           ++ F  T+Q    L D L A+GF A AL G++ Q  R++ +         +LVATDV AR
Sbjct: 268 SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 327

Query: 316 GLDISQLEAVINVDVTPDSEIHIHRVGRTGRVGQQGAAEGLALNLASMNEMGFVGKIEQL 375
           GLD+ ++  V N D+  D E +IHR+GRTGR G++G     A+ L   N++  +  IE++
Sbjct: 328 GLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGK----AILLVRTNQIRMLRTIERV 383

Query: 376 QGRESEWHEL--------SELTP-GKGSPLKPPMATLQIVGGRKEKIRAGDVLGALTGDC 426
                E  +L        S LT  G+        ++L+      EK++A   + A T   
Sbjct: 384 TRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATTLAA 443

Query: 427 GYAKDQVGKINVNEFSTYVAVDRAIAAEAARK 458
              K Q GK  +     YV  D  I A    K
Sbjct: 444 ILLKRQQGKRPL----FYVGADPMIEAMEREK 471