Pairwise Alignments

Query, 476 a.a., ATP-dependent 23S rRNA helicase DbpA from Variovorax sp. SCN45

Subject, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

 Score =  475 bits (1223), Expect = e-138
 Identities = 245/462 (53%), Positives = 326/462 (70%), Gaps = 6/462 (1%)

Query: 15  NGFAALALSPQMLANLTQLGYTQMTPIQAAALPPALLGKDLIAQAKTGSGKTAAFALALL 74
           N FAAL L P++LANL  +G+  MTPIQA +LP  L G+D+I Q KTGSGKTAAF L +L
Sbjct: 4   NSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVL 63

Query: 75  ANLNARRFAIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQVASLEHG 134
           +NLN +RF +QA+VLCPTRELADQV T+IR L RA  NIKV+TLCGG+ +  Q+ SLEHG
Sbjct: 64  SNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 135 AHIVVGTPGRIMDHLERENLDLSALNTLVLDEADRMLDMGFFDDIVTVARQCPKERQTLL 194
           AHI+VGTPGRI+DHL ++ +DLS LNTLVLDEADRML+MGF + +  +    P ERQTLL
Sbjct: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183

Query: 195 FSATYPEGIAKLAQQFMKNPEQITVQAQHEGSKIRQRWYQIKDS-ERLHAVSLLLDHFRP 253
           FSATYP  I ++AQ   +N   I V+A H+ S IRQ +Y+++ S  R  A+  LL H +P
Sbjct: 184 FSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQP 243

Query: 254 VSTLAFCNTKQQCRDLVDVLQAQGFSALALFGELEQRERDQVLVQFANRSCSVLVATDVA 313
            S++ FCNTK++ +++ D L   GFS + L G++EQRERDQ LVQFAN+S S+LVATDVA
Sbjct: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303

Query: 314 ARGLDISQLEAVINVDVTPDSEIHIHRVGRTGRVGQQGAAEGLALNLASMNEMGFVGKIE 373
           ARGLD+  L+AV N D++ D E+H+HR+GRTGR G    ++GLA +  S NE   V +I+
Sbjct: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAG----SKGLAFSFFSDNESYRVAQID 359

Query: 374 QLQGRESEWHELSELTPGKGSPLKPPMATLQIVGGRKEKIRAGDVLGALTGDCGYAKDQV 433
           +      E   L +   G   P    M T+QI GG+K+K+R GD+LGALT D     + +
Sbjct: 360 EYMDIAIEPSTLPQPAAG-ARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHI 418

Query: 434 GKINVNEFSTYVAVDRAIAAEAARKLSSGRVKGKSVKVRLLE 475
           GKIN+     YVAV + IA +A  K+++G++KG+  + RLL+
Sbjct: 419 GKINLFPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLLK 460