Pairwise Alignments

Query, 476 a.a., ATP-dependent 23S rRNA helicase DbpA from Variovorax sp. SCN45

Subject, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

 Score =  261 bits (666), Expect = 5e-74
 Identities = 145/402 (36%), Positives = 238/402 (59%), Gaps = 13/402 (3%)

Query: 17  FAALALSPQMLANLTQLGYTQMTPIQAAALPPALLGK-DLIAQAKTGSGKTAAFALALLA 75
           F  L LS ++L  L + G+T  TPIQ  A+P  + GK D++ QA+TG+GKTAAF + +L 
Sbjct: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63

Query: 76  NLNARRFAIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQVASLEHGA 135
            ++      QA++L PTRELA QV  EI  + +  + + V  + GG ++  Q+  L  G 
Sbjct: 64  TIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRGV 122

Query: 136 HIVVGTPGRIMDHLERENLDLSALNTLVLDEADRMLDMGFFDDIVTVARQCPKERQTLLF 195
            IVVGTPGRI+DH+ R  + L  ++ +VLDEAD ML+MGF DD+  + +    +++ LLF
Sbjct: 123 QIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLLF 182

Query: 196 SATYPEGIAKLAQQFMKNPEQITVQAQHEGSKIR-QRWYQIKDSERLHAVSLLLDHFRPV 254
           SAT P+ I KLA+ +M+  + I V+ Q   + +  Q +Y+I   ++   +S ++D  +  
Sbjct: 183 SATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKEF 242

Query: 255 STLAFCNTKQQCRDLVDVLQAQGFSALALFGELEQRERDQVLVQFANRSCSVLVATDVAA 314
             L FC TK    ++ + L  +G++A  L G++ Q +R++ L +F  +  +VLVATDVAA
Sbjct: 243 YGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVAA 302

Query: 315 RGLDISQLEAVINVDVTPDSEIHIHRVGRTGRVGQQGAAEGLALNLASMNEMGFVGKIEQ 374
           RG+DI+ L  V+N D+  + E ++HR+GRTGR G+QG A    +  +   +  ++ KI +
Sbjct: 303 RGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITF-VEPSEFRKFKYIQKIAK 361

Query: 375 LQGRESEWHELSELTPGKGSPLKPPMATLQIVGGRKEKIRAG 416
            + +  E  ++ ++   K          ++I+ G KE + +G
Sbjct: 362 TEIKREEVPDVKDIISAK---------KIKIISGIKEVLESG 394