Pairwise Alignments

Query, 277 a.a., Mobile element protein from Variovorax sp. SCN45

Subject, 386 a.a., ISSod1, transposase OrfA (NCBI) from Shewanella oneidensis MR-1

 Score =  124 bits (312), Expect = 2e-33
 Identities = 88/270 (32%), Positives = 139/270 (51%), Gaps = 14/270 (5%)

Query: 4   RSHDLPIRRQAELVNISRGSAYY----APKPVCDAD-LKLMRRIDELHLELPFA-GARML 57
           +SH  PI     ++++S+ S YY     P  V   + LKL R + +L  +   + G R +
Sbjct: 105 QSHLFPITLLCRVMSVSK-SGYYDWHKRPANVISVETLKLYRLVRQLFKQSRGSLGNREM 163

Query: 58  RDLLRGEGVAVGRKHMTTLMRRMGITALYR---KPNTSKKRPGRTIYPYLLRTLAITRAN 114
              LR EG  VGR  +  +M R+ + A  R   K  T +K         L        AN
Sbjct: 164 VKKLRKEGYQVGRYLVRKIMHRLRLKATQRCAYKVTTQRKHSDAVADNLLNMNFNPVSAN 223

Query: 115 QVWAMDISYIPMARGFIYLAAVIDWHSRRVLAWRVSISMDTEFCTDAVEEA--IARYGTP 172
           QVWA D++Y+    G++YLA V+D +SRR++ WR+   M T+  + A+ +A  + +    
Sbjct: 224 QVWAGDVTYLKTGEGWMYLAVVMDLYSRRIVGWRIDKRMTTDLISKALIKAYNLRQPARG 283

Query: 173 EIFNTDQGSQFTSSAFTGLLHDHGIRVSMDGKG-CWRDNVFIERLWRSIKYEEVYLHAYE 231
            +F++D+GSQ+TS  F  LL  +GIR SM   G CW DN  +ER + S+K++ ++  A  
Sbjct: 284 LVFHSDRGSQYTSKQFGRLLSSYGIRASMGDVGACW-DNAVVERFFGSLKHDWIFKVAQP 342

Query: 232 NVSQARSGIGRYIDFYNTRRPHSSLGARTP 261
                +  +  YI +YN  R HS+    +P
Sbjct: 343 TREFMKQDVTAYIKYYNLERLHSANNDLSP 372