Pairwise Alignments

Query, 314 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  151 bits (382), Expect = 2e-41
 Identities = 94/305 (30%), Positives = 161/305 (52%), Gaps = 12/305 (3%)

Query: 2   KRWRNINPALVLLVVLVCTMVFMSPLYQTAPGLMSFLQRAAPLVILTCGASFVLIAGGFD 61
           K W     +L+ L+ LV  + F++P + T   L++ L++ +   I+  G + V++  G D
Sbjct: 26  KEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGID 85

Query: 62  LSSGALITLVVIGCALITNGDADMTWTAVAAAYAMGLAVGLLNGLVVTRLKVPSIIATLG 121
           LS G+++ L     A +   +  +   AV  A   G A+G ++G+++ + KV + IATL 
Sbjct: 86  LSVGSVLALCGAFAATLVAMEVPVL-VAVPTALLAGAALGAISGIIIAKGKVQAFIATLV 144

Query: 122 GLLSIKGIAMVWSGGAP--SGYLP--QNLRYLGRGVLREVPLTGTLPIAVIVLAVFVALC 177
            +  ++G+ MV++ G P  +G+        + G G       T  +P+ V ++ V  A  
Sbjct: 145 TMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGY------TLGIPVPVWLMVVVFAGA 198

Query: 178 FWLMHRTNFGRLVLMIGDNPVAAELAGAPVRRVRVAAFVLSSLSAVTAGILLGG-FSGVS 236
           ++L++ T FGR V  +G N  A  L+G  V RV++  + +  L A  AGI++    S   
Sbjct: 199 WYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQ 258

Query: 237 VDVGTGYDLQAIAAAVIGGVVLLGGRGSIPGACIGALTLYTLFTVLNLLGFSEPLRVAVQ 296
              G GY+L AIAA V+GG  L+GG+G I G  IGAL +  L   LNLL  S   ++  +
Sbjct: 259 PTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAK 318

Query: 297 GLILI 301
            ++++
Sbjct: 319 AVVIL 323