Pairwise Alignments

Query, 314 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 337 a.a., galactose/methyl galactoside ABC transporter permease MglC from Vibrio cholerae E7946 ATCC 55056

 Score =  119 bits (299), Expect = 8e-32
 Identities = 93/323 (28%), Positives = 162/323 (50%), Gaps = 29/323 (8%)

Query: 13  LLVVLVCTMVFMSPLYQTAPGLMSFLQRAAPLVILTCGASFVLIAGGFDLSSGALITLV- 71
           +L +L+  +V   P + +   L + L +++  VI+  G + +++  G DLS+G  + L  
Sbjct: 22  VLFILLAIIVIQEPSFLSLRNLSNILTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLAA 81

Query: 72  VIGCALITNGD---------ADMTWTAVAAAYAM-GLAVGLLNGLVVTRLKVPSIIATLG 121
           VI   L+ + D          ++   AV  +  + G  +GL+NG++V  LKV   IATLG
Sbjct: 82  VISATLLQSMDNVNKVFPSLGEIPILAVIISVCLIGAIIGLVNGVIVAYLKVTPFIATLG 141

Query: 122 GLLSIKGIAMVWS---GGAPSGYLPQNLRYLGRGVLREVPLTGTLPIAVIVLAVFVALCF 178
            ++ + GI  ++    G +P     +      +G +R     G    + I     +A+ F
Sbjct: 142 TMIIVYGINSLYYDSVGASPIAGFDERFTTFTQGFIR----IGDFRFSYITFYAIIAIIF 197

Query: 179 -WLM-HRTNFGRLVLMIGDNPVAAELAGAPVRRVRVAAFVLSSLSAVTAGILLGGFSGVS 236
            W++ ++T FG+ +  +G NP AA+++G  V    +  + LS +     G+L  G  G +
Sbjct: 198 MWVLWNKTVFGKNIFAVGGNPEAAKVSGVNVPLTLLKVYALSGVFYAFGGMLEAGRIGSA 257

Query: 237 VD-VGTGYDLQAIAAAVIGGVVLLGGRGSIPGACIGALTLYTLFTVLN----LLGFSEPL 291
            + +G  Y+L AIAA V+GGV   GG GSI G   G L    +FTV+N     +G S   
Sbjct: 258 TNNLGFLYELDAIAACVVGGVSFAGGVGSIAGVVTGVL----IFTVINYGMTYIGVSPYW 313

Query: 292 RVAVQGLILIGAAALTAWRHQRR 314
           +  ++G I+I A AL + ++  +
Sbjct: 314 QYIIKGSIIIFAVALDSMKYANK 336