Pairwise Alignments

Query, 314 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 320 a.a., sugar uptake ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  134 bits (338), Expect = 2e-36
 Identities = 90/295 (30%), Positives = 155/295 (52%), Gaps = 10/295 (3%)

Query: 14  LVVLVCTMVFMSPLYQTAPGLMSFLQRAAPLVILTCGASFVLIAGGFDLSSGALITLV-V 72
           LV+L     F +P + T    M+ LQ+ A + I   G ++V++ G  DLS G++I +  +
Sbjct: 25  LVMLCIVFSFFNPRFMTVVNFMNILQQVAVVAIAAFGMTWVILLGEIDLSVGSIIAVAGM 84

Query: 73  IGCALITNGDADMTWTAVAAAYAMGLAVGLLNGLVVTRLKVPSIIATLGGLLSIKGIAMV 132
           +G      G       A+A   A G  +G+LNG++  +L +PS I T+  +   +G+  +
Sbjct: 85  VGAQCFAFGMGFAP--AIALTLAAGALMGMLNGVLTAKLLLPSFIVTVATMGIYRGMVSL 142

Query: 133 WSGGAPSGYLPQNLRYLGRGVLREVPLTGTLPIAVIVLAVFVALCFWLMHRTNFGRLVLM 192
            + GAP+  + +N  +   G    + L    PI + V+AV   +   ++ +T+FGR   +
Sbjct: 143 PTNGAPA--MIENETWTAIGTESFLGL----PIIIWVVAVLFVINQIVLSKTSFGRRAYL 196

Query: 193 IGDNPVAAELAGAPVRRVRVAAFVLSSLSAVTAGILLGG-FSGVSVDVGTGYDLQAIAAA 251
            G N  AA  +G  V R+++  F++S + A  +G+LL         + G  Y+L AIAAA
Sbjct: 197 TGGNREAAVYSGIKVDRLKILIFMISGVMAAISGVLLSSRLFSAQTNAGMSYELDAIAAA 256

Query: 252 VIGGVVLLGGRGSIPGACIGALTLYTLFTVLNLLGFSEPLRVAVQGLILIGAAAL 306
           V+GG  L GG G++ G  IGAL +  +   +N+L      ++ V+GL+++ A  L
Sbjct: 257 VLGGTSLAGGVGTMVGTLIGALIIGVMNNGMNMLSVPYFYQLIVKGLVILVAVWL 311