Pairwise Alignments

Query, 314 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 343 a.a., sugar ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  132 bits (333), Expect = 9e-36
 Identities = 96/304 (31%), Positives = 151/304 (49%), Gaps = 19/304 (6%)

Query: 12  VLLVVLVCTMVFMSPLYQTAPGLMS------FLQRAAPLVILTCGASFVLIAGGFDLSSG 65
           V  ++LV  + + + +   APG +S       +  +  L++++ G   V++    D+SSG
Sbjct: 10  VATLILVLAVAYAA-IGTAAPGYLSGATASVVVSNSLVLMLISLGTMMVILTRNIDVSSG 68

Query: 66  ALITL--VVIGCALITNGDADMTWTAVAAAYAMGLAVGLLNGLVVTRLKVPSIIATLGGL 123
           +++ L   V+G +L       +   A+A   A G   G  NGL+V  L +PSI+ATLG L
Sbjct: 69  SVLGLSAAVLGLSLTAGVSLPL---AIAFCLATGAVAGAFNGLMVAYLGIPSIVATLGTL 125

Query: 124 LSIKGIAMVWSGGAPSGYLPQNLRYLGRGVLREVPLTGTLPIAVIVLAVFVALCFWLMHR 183
              +GI +V +GG     LPQ L+ L         L     +  IV+   VAL + ++ R
Sbjct: 126 GLYRGIMLVLTGGRWIEDLPQGLKALAAN------LGFGFSVLTIVVLALVALAWIVLRR 179

Query: 184 TNFGRLVLMIGDNPVAAELAGAPVRRVRVAAFVLSSLSAVTAGILLGGFSG-VSVDVGTG 242
           T FGR    +GDN  AA   G PV+ V+ +AFV + + A  AG++     G +    G G
Sbjct: 180 TRFGRNFYAVGDNRAAAHHLGVPVKLVQFSAFVATGVCAALAGLVFAAQIGFIPNQAGNG 239

Query: 243 YDLQAIAAAVIGGVVLLGGRGSIPGACIGALTLYTLFTVLNLLGFSEPLRVAVQGLILIG 302
            +L+AIA  V+GGV LLGG GS+ G     + + ++ + L  L         + G IL+ 
Sbjct: 240 IELKAIAVNVLGGVSLLGGTGSVAGVFTAVIFITSIDSALVFLKIPAYWNDFIAGAILLS 299

Query: 303 AAAL 306
              L
Sbjct: 300 VLLL 303