Pairwise Alignments

Query, 314 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 336 a.a., sugar uptake ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  128 bits (322), Expect = 2e-34
 Identities = 100/311 (32%), Positives = 149/311 (47%), Gaps = 13/311 (4%)

Query: 2   KRWRNINPALVL----LVVLVCTMVFMSPLYQTAPGLMSFLQRAAPLVILTCGASFVLIA 57
           + WR+++   V     L +L+     ++P + +   L +   R+A + I+  GA+FV+ A
Sbjct: 15  RTWRDVDLRAVAPFAALALLLIVGAMVNPNFISLNNLANVATRSAFIAIIAVGATFVISA 74

Query: 58  GGFDLSSGALITLVVIGCALITNGD-----ADMTWTAVAAAYAMGLAVGLLNGLVVTRLK 112
           G  DLS G+++  V     L  N       A M   AV  A   G   GL NGL+ T  +
Sbjct: 75  GDLDLSVGSMVAFVASLMILFMNSGVIADPALMLTAAVLFAVVAGSVCGLANGLITTVGR 134

Query: 113 VPSIIATLGGLLSIKGIAMVWSGGAPSGYLPQNLRYLGRGVLREVPLTGTLPIAVIVLAV 172
           +   IATLG +   +G+    S G         L+ L R       L   +PIA+I+   
Sbjct: 135 IEPFIATLGTMGIYRGLTTWLSQGGAITLREPELQELYRPAYFGSILGMPVPIAIILAVT 194

Query: 173 FVALCFWLMHRTNFGRLVLMIGDNPVAAELAGAPVRRVRVAAFVLSSLSAVTAGIL-LGG 231
            VA   ++++RT +GR V+ +G N   A  +G  V RVR  AFV+  L    A +L +  
Sbjct: 195 AVAA--FILYRTRYGRHVVAVGSNSDVARYSGIAVNRVRTIAFVIQGLCVAVAVLLYVPR 252

Query: 232 FSGVSVDVGTGYDLQAIAAAVIGGVVLLGGRGSIPGACIGALTLYTLFTVLNLLGF-SEP 290
               S   G  ++LQAI A V+GG  L GG G + G   GA  L  +  ++ L  F SE 
Sbjct: 253 LGSTSATTGILWELQAITAVVVGGTALKGGAGRVWGTICGAFILELVGNIMLLSNFISEY 312

Query: 291 LRVAVQGLILI 301
           L  A+QG I+I
Sbjct: 313 LIGAMQGAIII 323