Pairwise Alignments

Query, 314 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Variovorax sp. SCN45

Subject, 317 a.a., L-arabinose transporter permease from Sinorhizobium meliloti 1021

 Score =  142 bits (359), Expect = 8e-39
 Identities = 95/304 (31%), Positives = 153/304 (50%), Gaps = 15/304 (4%)

Query: 13  LLVVLVCTMVFMS---PLYQTAPGLMSFLQRAAPLVILTCGASFVLIAGGFDLSSGALIT 69
           LLV+     V ++   P + T   ++  LQ    + ++ C   F L +  FDLS G+ + 
Sbjct: 15  LLVIFAAAFVVVALTVPNFLTERNMLGLLQSVVTIGVVACTMMFCLASRDFDLSVGSTVA 74

Query: 70  LVVIGCALITNGDADMTWTAVAAAYAMGLAVGLLNGLVVTRLKVPSIIATLGGLLSIKGI 129
              +   + +N    +    + AA A G  VGL NG+V+ R ++ ++I TL  +  ++G 
Sbjct: 75  FSGMVAVMASNATGSIV-LGLLAALACGGIVGLANGIVIARFRINALITTLATMQIVRGF 133

Query: 130 AMVWSGGAPSGYLPQNLRYLGRGVLREVPLTG--TLPIAVIVLAVFVALCFWLMHRTNFG 187
           A++ S G   G        +   V  ++ L+   T+P  + V+A+F  +  +L++RT FG
Sbjct: 134 ALIASDGRAVG--------INDPVFYQLSLSKFLTVPTPIWVMALFFIVFGFLLNRTVFG 185

Query: 188 RLVLMIGDNPVAAELAGAPVRRVRVAAFVLSSLSAVTAGILLGG-FSGVSVDVGTGYDLQ 246
           +  L IG NP A+ LAG  V R+R+  F L  L    AG+LL    +    +  TG +L 
Sbjct: 186 KNTLAIGGNPEASRLAGVDVARMRIWIFALQGLVCAVAGVLLASRITSGQPNAATGLELS 245

Query: 247 AIAAAVIGGVVLLGGRGSIPGACIGALTLYTLFTVLNLLGFSEPLRVAVQGLILIGAAAL 306
            I+A V+GGV L GGR ++ G  +G L +     V+NLL      +  V+GLIL+ A  L
Sbjct: 246 VISACVLGGVSLAGGRATMTGVVVGVLIMGIAENVMNLLNIQAFYQYVVRGLILLIAVLL 305

Query: 307 TAWR 310
              R
Sbjct: 306 DNMR 309