Pairwise Alignments

Query, 142 a.a., putative signal-transduction protein with CBS domains from Variovorax sp. SCN45

Subject, 620 a.a., CBS domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 58.2 bits (139), Expect = 2e-13
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 21  HATVFDALATLARFEVGALMVMDGEKLVGFLSERDYTRKVALQGKNSKEVRVSEIMTPDV 80
           HATV  A   +    V +L+V D  KLVG L+++D   +V   G +  ++ V + MT   
Sbjct: 166 HATVTQAALLMRNSRVSSLLVTDNHKLVGILTDKDLRNRVLASGLDG-QIAVHQAMTTSP 224

Query: 81  MTVTPQTRTRACMTLMSQRKFRHLPVVEGD-----KVVGMISIQDLM 122
           ++++        M LMS+    HLP+++       K +GM++  D++
Sbjct: 225 ISISSNALIFEAMLLMSEHNIHHLPIIDEQNTDEVKAIGMVTSTDIL 271



 Score = 29.3 bits (64), Expect = 1e-04
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 71  RVSEIMTPDVMTVTPQTRTRACMTLMSQRKFRHLPVVEGDKVVGMISIQDLMDDIIS--- 127
           R+S +M+   +T+           LM   +   L V +  K+VG+++ +DL + +++   
Sbjct: 151 RISTLMSSSPITIDAHATVTQAALLMRNSRVSSLLVTDNHKLVGILTDKDLRNRVLASGL 210

Query: 128 DQEATIEQLTT 138
           D +  + Q  T
Sbjct: 211 DGQIAVHQAMT 221