Pairwise Alignments

Query, 223 a.a., LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28) from Variovorax sp. SCN45

Subject, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

 Score =  161 bits (407), Expect = 1e-44
 Identities = 89/196 (45%), Positives = 119/196 (60%), Gaps = 9/196 (4%)

Query: 10  VHEDDHLLAFDKPAGLLCVPGRGEDKQDCLSARALLQWPDALIVHRLDMGTSGLVVMARG 69
           ++ED+H++A +KP+GLL VPGR  +  D + AR +   PD  +VHRLDM TSGL++ A+G
Sbjct: 17  IYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVKVVHRLDMSTSGLILFAKG 76

Query: 70  IEMQRALSAAFAERRVHKRYEAVVDGTLPQLDEWSVIDAPLMADWPRRPLQKI-DPAGKP 128
             M+ AL   F  R  HK Y A V G + Q +    ++ PL  DWP RP QK+    G+ 
Sbjct: 77  KHMESALKKQFQYRLTHKIYYARVWGVMEQNE--GEVNLPLCCDWPNRPKQKVCFEEGRD 134

Query: 129 SVTRWKAISAWSGEPASSAATHVLLEPLTGRSHQLRVHLLSIGHPILGDALYGDAALQAR 188
           S+TR++ +            T V L P+TGRSHQLRVH+ S+GHPI+GD LY        
Sbjct: 135 SLTRYQVVK------REEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPPEAVEF 188

Query: 189 APRLLLHASELGFVHP 204
           A RL LHA+EL F HP
Sbjct: 189 ADRLQLHAAELCFYHP 204