Pairwise Alignments

Query, 223 a.a., LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28) from Variovorax sp. SCN45

Subject, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

 Score =  100 bits (249), Expect = 2e-26
 Identities = 74/229 (32%), Positives = 117/229 (51%), Gaps = 20/229 (8%)

Query: 7   LHPVHEDDHLLAFDKPAGLLCVPGRGEDKQDCLSARALLQ---WPDALIVHRLDMGTSGL 63
           L  V++D++L+A +KPAG+L V     DK +       L+         +HRLD  TSG+
Sbjct: 2   LEIVYQDEYLVAVNKPAGML-VHRSWLDKHETEFVMQTLRDQIGQHVFPLHRLDRPTSGV 60

Query: 64  VVMARGIEMQRALSAAFAERRVHKRYEAVVDGTLPQLDEWSVIDAPLMADWPR--RPLQK 121
           +V A   ++   +   FA   + K Y A+V G +   +E +V+D PL  +  +      K
Sbjct: 61  LVFALSSQIASEVMPMFANHEMEKTYHAIVRGWI---EEANVLDYPLKEELDKIADKFAK 117

Query: 122 IDPAGKPSVTRWKAISAW-----SGEPASSAATHVLLEPLTGRSHQLRVHLLSIGHPILG 176
            D   + +VT ++ ++       +G+ A++    + ++P TGR HQLR H+  + HPI+G
Sbjct: 118 QDKEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVG 177

Query: 177 DALYGDAALQA------RAPRLLLHASELGFVHPVTMEELRFRRTPDFV 219
           D  +GD            A RL+LHASEL F+HP T + L  R   D V
Sbjct: 178 DTTHGDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGLDEV 226