Pairwise Alignments

Query, 223 a.a., LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28) from Variovorax sp. SCN45

Subject, 225 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  171 bits (432), Expect = 1e-47
 Identities = 96/207 (46%), Positives = 122/207 (58%), Gaps = 9/207 (4%)

Query: 7   LHPVHEDDHLLAFDKPAGLLCVPGRGEDKQDCLSARALLQWPDALIVHRLDMGTSGLVVM 66
           L  +HED  +L  +KP+GLL VPGR     D +  R L   P+A IVHRLDM TSG++V+
Sbjct: 14  LEILHEDKDILVVNKPSGLLSVPGRDPAYYDSVYTRVLRDHPNAQIVHRLDMATSGIIVV 73

Query: 67  ARGIEMQRALSAAFAERRVHKRYEAVVDGTLPQLDEWSVIDAPLMADWPRRPLQKID-PA 125
           A     +R L   F +R  HK Y A V G L    E   +D PL+ DWP RP QK+D   
Sbjct: 74  ALRRSAERELKRQFRDRETHKIYYARVAGHLKA--EQGSVDYPLICDWPNRPKQKVDHQI 131

Query: 126 GKPSVTRWKAISAWSGEPASSAATHVLLEPLTGRSHQLRVHLLSIGHPILGDALYGDAAL 185
           GK S T ++ IS       +  +T V L P+TGRSHQLRVH+++IGHPILGD  Y D   
Sbjct: 132 GKASKTLFEVISR------AKRSTLVKLTPITGRSHQLRVHMMAIGHPILGDNFYADPLA 185

Query: 186 QARAPRLLLHASELGFVHPVTMEELRF 212
           +  APRLLLHA  L   HP + + + F
Sbjct: 186 KRLAPRLLLHAQSLSLTHPYSKQPMTF 212