Pairwise Alignments

Query, 223 a.a., LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28) from Variovorax sp. SCN45

Subject, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

 Score = 84.7 bits (208), Expect = 2e-21
 Identities = 71/218 (32%), Positives = 111/218 (50%), Gaps = 19/218 (8%)

Query: 7   LHPVHEDDHLLAFDKPAGLLCVPGRGEDKQDCLSARALLQWPD-----ALIVHRLDMGTS 61
           L+ ++EDD LL  DK   ++  P +        +A +  Q  +        V+RLDM T+
Sbjct: 82  LNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKINNQNYKIRFVNRLDMDTT 141

Query: 62  GLVVMARGIEMQRALSAAFAERRVHKRYEAVVDGTLPQLDEWSVIDA-PLMADWPRRPLQ 120
           GL+++A+     + L+    E  + K Y AVV+G L  L E  + D+  L  +  +R L 
Sbjct: 142 GLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHL-DLKEGIIEDSIDLNENGIKRELS 200

Query: 121 KIDPAGKPSVTRWKAISAWSGEPASSAATHVLLEPLTGRSHQLRVHLLSIGHPILGDALY 180
                GK S T++K I           A+ + +  LTGR+HQ+RVHL S G+ I+GD LY
Sbjct: 201 NF---GKISKTKYKVIEELKN------ASVLEINLLTGRTHQIRVHLSSTGNYIIGDTLY 251

Query: 181 GDAALQARAPRLLLHASELGFVHPVTMEELR-FRRTPD 217
           G+ +      R  LH+  L F+HP+T E++    + PD
Sbjct: 252 GETS--KLIDRQALHSHILRFIHPITKEKIEIISKLPD 287