Pairwise Alignments

Query, 618 a.a., Efflux ABC transporter, permease/ATP-binding protein Atu2242 from Variovorax sp. SCN45

Subject, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  235 bits (600), Expect = 4e-66
 Identities = 161/504 (31%), Positives = 257/504 (50%), Gaps = 25/504 (4%)

Query: 105 HQTLAVNLPMRLRWNFHRLMLGQSMAFYQDEFAGRITAKVMQTALAVRETIFVLADVLVA 164
           H    +++ + L+   H  + G  + F++    G I  +V +    +RE +      L  
Sbjct: 225 HTANRIDIQLGLKLVQH--LFGLPLMFFKSRQVGAIVTRVRELD-TIREFLTGSMFTLTV 281

Query: 165 MGVYVATMIILVGVLDAQLVWPFLIWLVLYVVSLIYFVPRLGKVGKAQADARALMTGRVT 224
             +++   + ++ +L A L   F+  +  YV+   +  PR+    + Q    A  T  +T
Sbjct: 282 ELLFMFVFLYVMSLLSAPLTGLFIATVPCYVLLAWWLTPRMQAAIEKQFSHAAANTSFLT 341

Query: 225 DAYTNIATVKLFSHTQREAGFARDAMREFMHTGYGQMRLVSAFEIVNHTLSMGLTAGMAG 284
           +      T+K  +   R      +   + + TGY   +L +     NH + + L    + 
Sbjct: 342 ETVAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYDVQQLNNRS---NHLVQL-LQKITSV 397

Query: 285 MALWLWSNGAVGVGAVAAATAMALRLQGMSHWIMWEMTSLFENIG-------TVQDGMKT 337
             LWL   GA  V ++       +    M++ I   +  + E  G        ++     
Sbjct: 398 AILWL---GATEVLSLEMTIGQLIAFNMMTNHIAQPLARMVELWGQFIQTRVAIEKLGDM 454

Query: 338 LSRPRTVLDAADATVLQVPQGEVRFEHASFRYGDGGRRVIDDLNLTVKPGEKIGLVGRSG 397
           L+ P      +D   +    G + F++  FRY       I+DL+L ++ GE +G+VG SG
Sbjct: 455 LNLPVEQHTGSDNVTIS---GAISFKNILFRYQPDIPPTINDLSLDIRAGETLGVVGTSG 511

Query: 398 AGKSTLVNLLLRFHDLESGRILIDGQDIAHVTQDSLRSHIGMVTQDTSLMHRSVADNVAY 457
           +GKSTL  LLLR +  E G I IDG  + H+    LR  +G+V Q+  L H+SV++N+A 
Sbjct: 512 SGKSTLARLLLRLYSPEQGSITIDGIPLNHINVQQLRQRVGVVLQENFLFHKSVSENIAQ 571

Query: 458 GRPDATREQIEAAARRAEAHDFIQTLGDAGGRRGYEAHVGERGVKLSGGQRQRVAIARVM 517
            +P+A+ E+I  AA+ + AHDFI  L       GY+  + E G  LSGGQRQR+AIAR +
Sbjct: 572 SKPEASLEEIIEAAKLSGAHDFILKLP-----MGYDTVLAEGGQSLSGGQRQRLAIARTL 626

Query: 518 LKDAPILLLDEATSALDSEVEAAIQQSLYTLMEGKTVIAIAHRLSTIAAMDRLIVLDEGR 577
           L D  +L+LDEATSALD E +A IQ ++ ++  G+TVI IAHRLST+   DR+IVL +G 
Sbjct: 627 LSDPKVLILDEATSALDDESQAVIQANMASIARGRTVITIAHRLSTVRDCDRIIVLHQGT 686

Query: 578 VVEEGDHRTLMAQGGLYARLWAHQ 601
           +VE+G H+ L+A G  Y +LW  Q
Sbjct: 687 IVEQGSHQQLLAYGKQYKQLWQLQ 710