Pairwise Alignments

Query, 328 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 336 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  227 bits (578), Expect = 4e-64
 Identities = 126/332 (37%), Positives = 193/332 (58%), Gaps = 18/332 (5%)

Query: 12  SRLLQALGLVL----AVVVLNFVLVHAAPGDPVETIAGASGGMSPELMAQLRTQYGLDKS 67
           S + + LGL++     + +L F L+   PGDPVE + G    + PE+ AQ   + GL+K 
Sbjct: 3   SFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERR-VDPEMHAQAMERLGLNKP 61

Query: 68  LPVQLAVYLGKVAQGDLGYSYFFNLPVTQMIGERLPATLLLVLSSVLLAFFAGTALGVLS 127
           L  Q   Y+GK+AQGDLG S      V        PATL L ++++L A   G   GV++
Sbjct: 62  LYAQYLDYIGKLAQGDLGESLRTRESVWTEFSSLFPATLELSMAALLFAGILGLLAGVIA 121

Query: 128 SRKPNGWLSQFITVLSLVGFAAPVFWLGIMLVILLAS-------------VFPILPVAGM 174
           + K        +  +SL G++ P+FW G++L++  +              ++ I P  G 
Sbjct: 122 ALKRGSLFDHGVMGVSLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKTGF 181

Query: 175 RSIDSTGAGGFADMLDVAQHLVLPTLTLSLVYLAQYSRLARSSMLDVLGSDFIRTARAKG 234
             ID+  A      LD   HL+LP + L  + LA  +R+ RSSML+VL  D+IRTA+AKG
Sbjct: 182 MLIDTLLADEPGAFLDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKAKG 241

Query: 235 LADRVVLYKHALRNALLPVVTVLGLQFGNVLAGAILVETVFNWPGLGRLAFESVLRRDYP 294
           L+   V++ H LRNAL+PV+TV+GLQ G +LAGA+L ET+F+WPG+G+   E++  RDYP
Sbjct: 242 LSPSRVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDYP 301

Query: 295 TILGVLLFSSIVVVVMNQLTDLCYRFIDPRIK 326
            +   +L  + +V+++N + D+ Y F +PRI+
Sbjct: 302 VVQNGILLIACLVILVNFVVDILYGFANPRIR 333