Pairwise Alignments

Query, 328 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 312 a.a., peptide ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  201 bits (512), Expect = 1e-56
 Identities = 107/319 (33%), Positives = 181/319 (56%), Gaps = 12/319 (3%)

Query: 8   RHAASRLLQALGLVLAVVVLNFVLVHAAPGDPVETIAGASGGMSPELMAQLRTQYGLDKS 67
           R   +R LQ L ++  + ++ F+LV   PGDP   + GA    +P  +A++R QYGLD+ 
Sbjct: 5   RFVLTRPLQFLPVIFGISIITFILVRLIPGDPARNLLGARA--TPSAIAKIRAQYGLDEP 62

Query: 68  LPVQLAVYLGKVAQGDLGYSYFFNLPVTQMIGERLPATLLLVLSSVLLAFFAGTALGVLS 127
           +  Q   +L  +A G++G S  + + V ++I  R+  T+ LVLSSV+LA      +  L+
Sbjct: 63  MWQQYFYFLKNLADGEMGKSILYKIDVLKLIATRVEPTIALVLSSVVLAVLIAVPMAALA 122

Query: 128 SRKPNGWLSQFITVLSLVGFAAPVFWLGIMLVILLASVFPILPVAGMRSIDSTGAGGFAD 187
           +R         + V+S  G   P FWLG+ML+IL +    +LPV+G  +        F D
Sbjct: 123 ARNSGKAPDHIVRVVSTFGIGFPPFWLGLMLMILFSVKLDVLPVSGYGAT-------FGD 175

Query: 188 MLDVAQHLVLPTLTLSLVYLAQYSRLARSSMLDVLGSDFIRTARAKGLADRVVLYKHALR 247
            L    HL+LP+LT++L       R  R++M++ L SD    ARA+G+ +R+V ++H + 
Sbjct: 176 KL---AHLILPSLTVALSLSTVLVRSLRAAMIESLKSDVATAARARGMPERIVFWRHVVP 232

Query: 248 NALLPVVTVLGLQFGNVLAGAILVETVFNWPGLGRLAFESVLRRDYPTILGVLLFSSIVV 307
           N+L+P + +L +  G ++ G ++VE+VF  PG+G+L   ++  RDY  + GV +  +   
Sbjct: 233 NSLVPTINLLAVNIGWLIGGTVVVESVFALPGMGQLLVRAIFSRDYMVVQGVAMVFACAT 292

Query: 308 VVMNQLTDLCYRFIDPRIK 326
           V++N + D+    +DPR+K
Sbjct: 293 VLVNFIADIVTVAVDPRVK 311