Pairwise Alignments

Query, 537 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 530 a.a., extracellular solute-binding protein, family 5 from Pseudomonas syringae pv. syringae B728a

 Score =  112 bits (281), Expect = 3e-29
 Identities = 127/509 (24%), Positives = 216/509 (42%), Gaps = 62/509 (12%)

Query: 28  LLPLSVFAAAEPKRGGTLVIGSTQTPRHLNGAVQSGIATAMPSTQIFASPLRFDD-KWNP 86
           LL L+ FA A       LV  S  +P   +GA  +       S  I+     F       
Sbjct: 13  LLALAPFAQA----ASNLVFCSEASPAGFDGAQYTSSTDNDASEPIYNRLTEFKQGDTTV 68

Query: 87  QPYLAESWKLADDGKSLTLKLRKDALFHDGK------PVTSADVAFSI-LAIKANHPFT- 138
            P LA SW  ++DG   T  LR+   FH  K         + DV F+    +K +HPF  
Sbjct: 69  VPALATSWDTSEDGLVYTFHLREGVKFHSNKNFKPSRDFNADDVLFTFNRMLKPDHPFRV 128

Query: 139 ---------TMMG---PVEKVDTPDAYTAVVRMSVPHPAIVLAMSPALCPILPKHIY--- 183
                    T MG    ++ V+  D  T V  ++    A +  ++     IL        
Sbjct: 129 AYPTEFPYFTGMGLNKKIKSVEKTDPLTVVFTLNTVDAAFIQNIAMNFAGILSAEYAEQL 188

Query: 184 ---GDGQDLKNHPRNTTDVIGSGPYRVTDFKPAQRVVLERFDKFFIPGRPYLDKIIINIT 240
              GD +D+   P      IG+GP+    ++   ++  +   +F+ P R  +D++I  I 
Sbjct: 189 MAKGDVRDINQQP------IGTGPFVFQRYQKDSQIRYKGNKEFWDPSRVKIDQLIFAIV 242

Query: 241 PDSASLMLGLERGDIQMVPFATLPTDLKRLANDPKMSLTPK-GYDGIGALNWLAFNTAKK 299
            D+++ M  L+  + Q V     P DL  L  D  + +  K G++    L ++++N   +
Sbjct: 243 TDASARMQKLKANECQ-VSVNPRPADLASLKADKSLQVIEKPGFN----LGYISYNVRHE 297

Query: 300 PLSDVQVRKAIATAIDKNFITKALMGGFATVSDGPLVASSPFAVPDLVRYPLDLKKAGEM 359
           PL  +QVR+A+  A++K  I  A+  G   ++   +  +       +   P D +KA  +
Sbjct: 298 PLGKLQVRQALDMAVNKKAIINAVYQGAGQLAVNAMPPTQWSYDDSIKDAPYDPEKARTL 357

Query: 360 LDAAGYKAGAGGERFKLTIDYLP---GVDDQQKNVAEYIRGQLKKVGITVEVRASADFPA 416
           L AAG K G      +LT+  +P     +   K +AE ++    KVGI V++  S ++  
Sbjct: 358 LRAAGVKEGT-----ELTLWAMPVQRPYNPNAKLMAEMLQADWAKVGIKVKI-VSYEWGE 411

Query: 417 WAKRLASHDFDMSMDTVFNW----GDPIIGVHRTYLSTNIKPIVWTNTQSYANPKVDELL 472
           + KR  + + D+S+     W    GDP   +   Y   +   I   N   + + K D+L+
Sbjct: 412 YLKRTKNGEHDISL---IGWTGDNGDPDNWLGTLY---SCDAIGGNNYSMWCDKKYDDLI 465

Query: 473 NTAGGLIDATQRKAYYATFQKIVTDELPI 501
             A    D  +R   Y   Q+ + +++PI
Sbjct: 466 KDAVATTDRVKRTELYQRAQRYLKEQVPI 494