Pairwise Alignments

Query, 703 a.a., Flagellar biosynthesis protein FlhA from Variovorax sp. SCN45

Subject, 695 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Pseudomonas fluorescens FW300-N2E2

 Score =  335 bits (859), Expect = 4e-96
 Identities = 234/702 (33%), Positives = 370/702 (52%), Gaps = 53/702 (7%)

Query: 13  DIALVLLVLGVLVVLFAPIPSGLLDFLILTNFSFAFLVLLLTFYMARPVEFSTFPSLLLI 72
           ++    +VLG++ +L  P+P+ ++D LI  N   + L+++L+ Y+ RP+ FS+FP++LL+
Sbjct: 17  EVVGAFVVLGIVFMLILPLPTSVVDALIAINICISCLLIVLSLYLPRPLAFSSFPAVLLL 76

Query: 73  ATLFRLSLNVAATRLILSDGDAGRVIGAIGAFVVGGNYVIGLIVFLILIVVQYVVVTSGA 132
            TLFRL+L+VA TRLIL  GDAG ++ A G FVVGGN  +GL++FLIL VV ++V+T G+
Sbjct: 77  TTLFRLALSVATTRLILLQGDAGHIVQAFGDFVVGGNLAVGLVIFLILTVVNFLVITKGS 136

Query: 133 QRVSEVAARFTLDSMPGQQMSIDADLNMGFIDQAEAQRRRKNIEKEAGFYGAMDGASKFV 192
           +RV+EVAARFTLD++PG+QMSID+DL    ID +EA+RRR+ + KE+  +GAMDGA KFV
Sbjct: 137 ERVAEVAARFTLDALPGKQMSIDSDLRANLIDVSEARRRREELNKESQLFGAMDGAMKFV 196

Query: 193 KGDAIAGIIILLINIIGGLVIGVMQHGLPWGQALQTYTLLTIGDGIVTQVPALVIAVGTG 252
           KGDAIAG++I++IN+IGG  +G+MQH +   +++  Y +LTIGDG++ Q+PAL+I++  G
Sbjct: 197 KGDAIAGLVIVVINLIGGFSVGMMQHDMGASESMHLYAVLTIGDGLIAQIPALLISLTAG 256

Query: 253 IIVTRSS-----SDTNLSREALRQVSSFPKTLLMVALALGGLLVLPGIPAIPTLVL---- 303
           +I+TR S     + +++ +E  +Q+++ PK  ++ ++ + G   LPG+P +  +V+    
Sbjct: 257 MIITRVSPQGEPAGSSVGKEIAQQLTAEPKAWVIASVGMLGFAALPGMPTLVFIVIALIT 316

Query: 304 -TAGFLLAATLLYRAAKVKSDNAAQGMGDPIDPENLAAADGTAAAAASDDPYTLLQVEPV 362
            TAG +     LY  A++    A QG       E +A A   A    S DP     ++  
Sbjct: 317 GTAGIV----QLYSRARL----ARQG---DQPAEVVAPAQNGAEDLRSFDPTRAYLLQFS 365

Query: 363 EVHLGGNWGPVINQPGSVFMERIASFRKQHANEFGLVLPRVRFKDSSRLSADRY-----E 417
           +   G       N      ++ I   R      FGL LP    + S+ L  D +     E
Sbjct: 366 KAMEG-------NAAAEEAIQAIRKKRNALVAGFGLTLPPFEIEYSALLEDDEFRFCVHE 418

Query: 418 IHLDGVLVGKGEARADRLLAIHPSGDTKSIPGEPTRDPTYGLPALWIEERQREAAAQAKF 477
           + +     G+  A A   L + P        G   RD       LW+        A  + 
Sbjct: 419 VPMLRATFGERVAVARGPLPLEPRDGQ---VGSEVRDEQQW---LWLTP-DDPLLADERV 471

Query: 478 TLVDAPTVFMTHLTEMLRRESATLLTRSEVDRLLSRVRKSQPGLVEELIPTVLSASDVQK 537
             V A  + +  ++  +       L   E   +LS +   QP LV+EL  T +  +    
Sbjct: 472 EAVSAAELLVERMSRAMFATGPQFLGLQESKSILSWLEAGQPELVQELQRT-MPLARFAA 530

Query: 538 VLQNLLREKVSIRHVEAILETLADAGRATRDTAQLTEIVRQRLGHAICQGLIGEASALQV 597
           VLQ L  E V +R V  I E+L + G+  RD   LT+  R  L   I      E   L V
Sbjct: 531 VLQRLAGEGVPLRAVRLIAESLIEHGQHERDVGALTDYARIALKSQIYHQYRDE-DGLHV 589

Query: 598 LTLDPAIESQFLQSMQIAVGEAGATTAAGTQPFVIDPRLSEQLIKRLVQQAERMMKSNLL 657
             L P  E     +++    E           F ++   +  L+ +L +     +++  +
Sbjct: 590 WLLTPETEGLLRDALRQTQTETF---------FALESLHTRALVMQLREGFP--LRAKRV 638

Query: 658 PVLLCAPELRRHVRGLSERVMPHLRVLSMAEVPHTIELKSFG 699
            VLL A +LR  +R L      H+ VL+ +E+    ++   G
Sbjct: 639 AVLLVAQDLRAPLRDLLRDEFNHVPVLAFSELHSNAQVTVLG 680