Pairwise Alignments

Query, 228 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

Subject, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

 Score = 65.1 bits (157), Expect = 1e-15
 Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 12/213 (5%)

Query: 15  VEFEDYLQFARIGLIEAIDRFDPLRGAQFKTFATKRVQGAILNGLARFTEKNQQIALSMR 74
           V  ED +Q   +GL+EA   +D  +GA F+T+A  R++GA+L+ + R     + +    R
Sbjct: 42  VLIEDLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNR 101

Query: 75  LRRERLEAVKDAAAQAAPGAAQGTDSPPSGRQPEELFRYLAE-VGIGLALSVMLEDTGMI 133
              + + AV +      P     TD+  +      L +Y +  + I  +  V +ED G+ 
Sbjct: 102 EISQAI-AVLEGELNRDP-----TDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVS 155

Query: 134 DSG-APGDTGQLPSPEVSYFRQSEIAQLRSVLRNLVDRLGEQQRMVIHQHYLQEVPFEEI 192
           D   +P + G+  SP    F        R  L   +  L E++ +V+  +Y +E+  +EI
Sbjct: 156 DDAISPFEEGEDNSP----FHGVAEESFRKALVESIKSLPEREALVLSLYYDEELNLKEI 211

Query: 193 ARRVGLTRGRVSQLHRQALGRLRELLGKDARFD 225
              +G++  RVSQ+  Q++ RLR  L    R D
Sbjct: 212 GEVLGVSESRVSQILSQSMQRLRTKLSSWTRND 244