Pairwise Alignments

Query, 228 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score = 63.2 bits (152), Expect = 6e-15
 Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 27/236 (11%)

Query: 9   RRTHNDVEFEDYLQFARIGLIEAIDRFDPLRGAQFKTFATKRVQGAILNGLARFTEKNQQ 68
           R ++  +   D ++   +GLI A+++FDP RG +F T+AT  ++  I   L   T   + 
Sbjct: 109 RYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQT---RT 165

Query: 69  IALSMRLRRERLEAVKDAAAQAAPGAAQGTDSPPSGRQ-PEELFRYLAEVGIGLALSVML 127
           I L + + +E      +   + A   +Q  D  P+  +   EL R + +V   L L+   
Sbjct: 166 IRLPIHVVKE-----LNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLN--- 217

Query: 128 EDTGMIDS--GAPGDTGQLPSPEVSYFRQSEIA----QLRSVLRNLVDRLGEQQRMVIHQ 181
           E    +D+  G  GD   L     S+    E +     +R  L N +D L  +Q+ V+ +
Sbjct: 218 ERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLAR 277

Query: 182 HY----LQEVPFEEIARRVGLTRGRVSQLHRQALGRLRELLGK-----DARFDVSW 228
            +     +    EE+ R + LTR RV Q+  + L RLRE+L K     +A F+V +
Sbjct: 278 RFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNMEALFNVEY 333