Pairwise Alignments

Query, 228 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

Subject, 320 a.a., RNA polymerase sigma factor SigD from Synechococcus elongatus PCC 7942

 Score = 62.0 bits (149), Expect = 1e-14
 Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 17/211 (8%)

Query: 14  DVEFEDYLQFARIGLIEAIDRFDPLRGAQFKTFATKRVQGAILNGLARFTEKNQQIALSM 73
           +++  D +Q   IG+   +++FDP +G +F T+A   ++ AI   +A   EK + I L +
Sbjct: 108 NMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIA---EKARTIRLPI 164

Query: 74  RLRRERLEAVKDAAAQAAPGAAQGTDSPPSGR----QPEELFRYLAEVGIGLALSVMLED 129
            +  E+L  +K    Q +    +    P         P ++  YL +    L+L + + D
Sbjct: 165 HI-TEKLNKIKKMQRQLSQQLGRTATLPELAAALDLTPAQVRDYLEKARHPLSLDLRVGD 223

Query: 130 TGMIDSGAPGDTGQLPSPEVSYFRQSEIAQLRSVLRNLVDRLGEQQRMVIHQHY----LQ 185
               + G   +T    +PE    +    A +R  +  L+D+L EQQR VI   Y     Q
Sbjct: 224 NQDTELGDLLET-DCTTPEEFTLQ----ASMRRDIDRLLDQLTEQQRQVIALRYGLEDGQ 278

Query: 186 EVPFEEIARRVGLTRGRVSQLHRQALGRLRE 216
            +    I  R+ ++R RV QL R+AL  LR+
Sbjct: 279 VMTLASIGDRLQISRERVRQLEREALHTLRQ 309