Pairwise Alignments

Query, 228 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

Subject, 239 a.a., flagellar biosynthesis sigma factor (RefSeq) from Shewanella loihica PV-4

 Score = 65.5 bits (158), Expect = 9e-16
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 13/206 (6%)

Query: 15  VEFEDYLQFARIGLIEAIDRFDPLRGAQFKTFATKRVQGAILNGLARFTEKNQQIALSMR 74
           V+ +D LQ   +GL+EA  +FD  +GA+F+TFA  R++G++L+ + R       +  S+ 
Sbjct: 39  VQLDDLLQAGMMGLLEASAKFDGSKGAKFETFAGIRIRGSMLDEIRR----GDWVPRSVH 94

Query: 75  LRRERLEAVKDAAAQAAPGAAQGTD-SPPSGRQPEELFRYLAEVGIGLALSVMLEDTGM- 132
             + R+  V D   Q     A+  + +       +E    L +V +G  + +  ED G+ 
Sbjct: 95  RNQRRIAQVIDELEQELGRDAKDNEIADRLDMTLDEYHHILNDVSVGKVVGI--EDLGVS 152

Query: 133 IDSGAPGDTGQLPSPEVSYFRQSEIAQLRSVLRNLVDRLGEQQRMVIHQHYLQEVPFEEI 192
           +D     D  Q  +     F      Q    L   +  L E+  +V+  +Y + +  +EI
Sbjct: 153 VDVVRQEDDHQDDA-----FESLAETQFHEALVEAIKLLPERDGLVLSLYYDEALNLKEI 207

Query: 193 ARRVGLTRGRVSQLHRQALGRLRELL 218
              + ++  RVSQ+H QA+ RL+  L
Sbjct: 208 GAVLDVSESRVSQIHSQAMLRLKAKL 233