Pairwise Alignments

Query, 325 a.a., Mobile element protein from Variovorax sp. SCN45

Subject, 327 a.a., transposase, IS4 family from Pseudomonas syringae pv. syringae B728a

 Score =  402 bits (1033), Expect = e-117
 Identities = 209/325 (64%), Positives = 247/325 (76%), Gaps = 4/325 (1%)

Query: 1   MSQISFADAEQAGKRKKTRREVFLGEMELVVPWKVLLKVIEPHYPVAGRGRRPYSLQAML 60
           M Q++FADAE AGKRK+TR+E+FL EM+ VVPWK L+ +IEP+YP    GR  Y L AML
Sbjct: 2   MKQMTFADAEYAGKRKRTRKELFLIEMDQVVPWKGLIALIEPYYPKGEGGRPAYPLMAML 61

Query: 61  RVHLMQNWFALSDPAMEEALYEIASLRTFAGLGLEAIPDETTILNFRHLLEANDLAEDIF 120
           RVHLMQNWF  SDPAMEEALYE   LR F+GL LE IPDETTILNFR LLE ++LA  I 
Sbjct: 62  RVHLMQNWFGYSDPAMEEALYETTILRQFSGLSLERIPDETTILNFRRLLEKHELATGIL 121

Query: 121 NQVNAHLARKGLLLKRGSIVDATIIAAPSSTKNSTGERDPEMHQTKKGNQWHFGMKAHIG 180
             +N +L  +GL L++G+IVDAT+I APSSTKN  G+RDPEMHQTKKGNQ++FG KAHIG
Sbjct: 122 GVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNKDGKRDPEMHQTKKGNQYYFGAKAHIG 181

Query: 181 VDADSGLVHTVTTTAANEADVEQVSDLLHGKEDAVWADSGYRGAQSRVK---RNVQWHIA 237
            D +SGLVH+V  TAAN ADV QV+ LLHG+E+ V AD+GY G + R +   R V W IA
Sbjct: 182 ADDESGLVHSVVVTAANVADVTQVAKLLHGEENVVCADAGYTGVEKREEHTGRKVIWQIA 241

Query: 238 GRPSDIAKVTQSRAKARA-RKQEYQKASIRAKVEHPFRVIKRQFGLAKVRFKGLAKNTAH 296
            R S   K  +     +A RK E  KA +RAKVEHPFRVIKRQFG  KVRF+GLAKNTA 
Sbjct: 242 ARRSTYKKHGKRNVLYKAIRKIEKAKAQVRAKVEHPFRVIKRQFGYEKVRFRGLAKNTAQ 301

Query: 297 VITLFALSNLWMARRKLIAMAGQVR 321
           ++TLFALSNLWMARR L+A AG+VR
Sbjct: 302 MVTLFALSNLWMARRHLLASAGEVR 326