Pairwise Alignments

Query, 480 a.a., Cytochrome c oxidase (cbb3-type) subunit CcoN (EC 1.9.3.1) from Variovorax sp. SCN45

Subject, 530 a.a., Cytochrome c oxidase polypeptide I (EC 1.9.3.1) from Pseudomonas fluorescens FW300-N2E2

 Score = 71.2 bits (173), Expect = 8e-17
 Identities = 75/340 (22%), Positives = 139/340 (40%), Gaps = 39/340 (11%)

Query: 160 IYVANWFYGAFIIAVALLHIVNGAV----VPAGWMKSYSAYAGVQDAM----VQWWYGHN 211
           ++V  W   AF++ +A++ ++ G V    +   +  S+ + AG  D +    V W++GH 
Sbjct: 201 LFVWTWLITAFLL-IAVMPVLAGCVTMMLMDIHFGTSFFSAAGGGDPVLFQHVFWFFGHP 259

Query: 212 AVGFFLTAGFLGMMYYYIPKQAGRPVYSYRLSIVHFWALIFTYMWAGPHHLHYTALPDWT 271
            V   +   F G +   IP  + +P++ Y   +    A+ F       HH+    +P   
Sbjct: 260 EVYIMILPAF-GAVSSIIPAFSRKPLFGYTSMVYATAAIAFLSFIVWAHHMFVVGIPLVG 318

Query: 272 QSLGMVFSLILLAPSWGGMINGVMTLSGAWH-KLRTDPILRFLIVALSFYGMSTFEGPMM 330
           +   M  +L++  P+   + N   T+   W   L  +  + F +  +  + +  F G M+
Sbjct: 319 ELFFMYATLLIAVPTGVKVFNWASTM---WQGSLTFETPMLFAVAFVILFSIGGFSGLML 375

Query: 331 SIKTVNALSHYTDWTIGHVHSGALGWVGFISMGSLYYLIPRMYGRTAMYSTRAIEVHFWI 390
           +I   +     T + + H H   +    F    S YY +P+  G   MY     ++HFW+
Sbjct: 376 AIAPADFQYQDTYFVVAHFHYVLVPGAIFGIFASAYYWLPKWTGH--MYDETLGKLHFWL 433

Query: 391 ATIGIVLYIAAMWIAGVMQGLMWRSINPDGTLTYTFVESVKATFPFYLVRVIGGVLYLSG 450
           + IG+ L    M   G + G+  R   PD  L +           F +V  IG  ++ + 
Sbjct: 434 SFIGMNLAFFPMHFVG-LAGMPRRI--PDYNLQFA---------DFNMVSSIGAFMFGTT 481

Query: 451 MLLMAWNFWMTVISGRAARAE-----------IPPPAMAH 479
            +   +    T+  G  A A+           +P PA  H
Sbjct: 482 QIFFLFIVIKTIRGGEPAPAKPWDGAEGLEWSVPSPAPYH 521



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 362 MGSLYYLIPRMYGRTAMYSTRAIEVHFWIATIGIVLYIAAMWIAGVMQGLMWRSINPDGT 421
           +G   ++IP M G   M   R     FW+     ++ ++ ++  G      W    P  T
Sbjct: 95  VGLANWMIPLMIGAPDMALPRMNNFSFWLLPAAFLMLVSTLFTPGGGPNFGWTFYAPLST 154

Query: 422 LTYTFVESVKATFPFYLVRVIG 443
            TY   ESV  TF  + + ++G
Sbjct: 155 -TYA-PESV--TFFIFAIHLMG 172