Pairwise Alignments

Query, 705 a.a., Sensory box histidine kinase/response regulator from Variovorax sp. SCN45

Subject, 928 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  266 bits (679), Expect = 4e-75
 Identities = 217/679 (31%), Positives = 334/679 (49%), Gaps = 51/679 (7%)

Query: 38  DSLLVVDQTGRIVLANPSAATLLGYAQNELVGLNVEALVPDSIRPRHASYREAYGRAPRP 97
           D+++ +D  G ++  +  AA L G  + E++G     L   S     A   +A  R    
Sbjct: 166 DAIVGLDHAGAVLYWSAGAAELFGLPRAEVLGRPASGLPFWS-----AELAQALARV--- 217

Query: 98  RPMGTHMELVAKRKD---GSEVMVEIALSPLQNHGLPFVVAAIRDIGAYPRVKQA--LQR 152
                   L  +  D   G  + + +A     +  +      +RD+ A    ++A  LQ 
Sbjct: 218 --QDCDETLTLQHDDVGGGRTLEIVVAAVCAASGAVVGAALTVRDVSALVAERRASELQG 275

Query: 153 ARYSEHLAQLGRLAVDTRDLQAVLE---HVPEIITKALEVEVAMVWLLDASRAEFRVASG 209
            + SE    L RL        A+ E   H  +I  +A    V    LL   R  F+V   
Sbjct: 276 HQLSEERTHLQRLFDQAPGFIAITEGPQHQLKIANRAFHQLVGARELL--GRPAFKVFPQ 333

Query: 210 VGLVAGEEIGARMVNRPDTPPGFVLSQGRPVVVQDYGKELRFSVPKA--YLEAGLVSALA 267
           +   A  E+  +           V   GRP + +D    +R   P+A    E   V+ + 
Sbjct: 334 LESRALSELLQQ-----------VYVTGRPYIGRDIAVRVR---PQAGGKAERRYVNFIF 379

Query: 268 VPLSDRGRVIGMLSVRSTE--SKRFGDEEV-RFLESLSSLLATSLQRTQ-TEEALNHAQR 323
            P+      +  +  +  +  ++    +E+ R  E L  L+    +  + + +AL  +Q+
Sbjct: 380 QPVFREDEQVSGIFCQGHDVTAQVLAQQELQRSSERLQELVEERTRELELSRQALYQSQK 439

Query: 324 LESVGQLTGGIAHDFNNLLTVIQGNLQVLEELPALAQDGYAQQLLGAATRASRRGAELTG 383
           LE++G+LTGG+AHDFNN+L VI GNLQ+L+  P +  +  A + + AA  A  RGA+L  
Sbjct: 440 LEAIGKLTGGVAHDFNNVLQVIAGNLQLLQ--PLVDDNRTAAKRVDAAGSAVERGAKLAR 497

Query: 384 KLLAFSRRQVLQPVAVDTHALLYSLADMLRRTLDQRIGIEIDTAPGRPLVVADPGQLESA 443
           +LLAF+RRQ L+P   +   LL  L ++LR+ L +RI IE   A G    + DP QLE  
Sbjct: 498 QLLAFARRQPLRPQPTNLGRLLRDLDELLRQALGERIEIETVVAGGLWTTMVDPNQLEQV 557

Query: 444 LLNIAINARDAMPEGGTLHFRTAICGALPAILRNQRNDPQGSAA-AHFVAISIADSGSGM 502
           +LN+AINARDAMP+GG L           ++L     + Q       +V ++++D+G GM
Sbjct: 558 VLNLAINARDAMPDGGKLTLELG-----NSMLDEHYAETQSDVTPGQYVLLAVSDTGVGM 612

Query: 503 TDDVKERAFEPFFTTKEAGRGTGLGLSTVYGFVNQSRGAVAIDSEIGQGTTVTLYLPQQE 562
             ++ E+AFEPFF+TK  G GTGLGLS  YGF  QS G + + SE G GTTV LYLP+ E
Sbjct: 613 PAEIIEQAFEPFFSTKPEGHGTGLGLSMAYGFAKQSGGHIRLYSEEGTGTTVKLYLPRTE 672

Query: 563 EARAPAAAEEHAGEALPAGLRVMLVEDDAEVRKVVENFLCTLGCEIVIAASTAEQALATL 622
           +    A      G  +     +++VEDD  V+  V   L  LG   V+ A+ A+ AL+ L
Sbjct: 673 QPEVQAQPST-VGPVVGGSETILVVEDDLPVQATVIELLTGLGYS-VLRANDAQSALSIL 730

Query: 623 DTGTEPFDLLLSDIALGAGMRGTRLAAEIRQRFPRVAVLLMSGFSSELLDADREVPQGWE 682
            +G  P DLL +D+ +   +  T LA + R   P +AVL  SG++   +     +  G E
Sbjct: 731 QSGL-PIDLLFTDVVMPGPLSSTELARQARLLLPDIAVLFTSGYTRNAVVHGGRLDPGVE 789

Query: 683 LLRKPYTRSELARAMARVL 701
           LL KPY + +LAR + ++L
Sbjct: 790 LLSKPYRQEDLARKVRQLL 808