Pairwise Alignments

Query, 380 a.a., ABC-type antimicrobial peptide transport system, permease component from Variovorax sp. SCN45

Subject, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score = 57.0 bits (136), Expect = 9e-13
 Identities = 83/383 (21%), Positives = 153/383 (39%), Gaps = 38/383 (9%)

Query: 25  LIGITFAVFLMMQMTAMFAGILNRAYSTVTNVGAAMWIMDPGVNTPTSAIA--LPDYLLD 82
           +IG+   +  ++ + ++  G+ N   S +T +GA +  + P  N    A++    D  + 
Sbjct: 25  IIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVISVLPSQNFGGPAVSKNFNDNDVS 84

Query: 83  SVRSMDGVSYAVPMFVGG-ALVRLDSGTYQSVTVVGLDD-TSLLGRP---EIEQGRL--- 134
           +VR++ GV   V  + G   L   D   Y +V V+     T +  +    E  +GR    
Sbjct: 85  AVRNVRGVEEVVAAWFGSYELEYRDQSHYGNVLVIEPSKFTHVYSKTWGYEPYKGRWIED 144

Query: 135 EDIYADNSFFVVDDAEFPKLENPHIGSTFELNDNRGVIVGIAKVASNGLNGVPTLYTTYS 194
            D Y+    + +    F +     IG    +ND +  ++GI +   N       + +   
Sbjct: 145 SDKYSCMIGYALATNSFDR--EIDIGDKITINDKKYKVIGILEETGNPRTENSVILSKDV 202

Query: 195 RAIQYLPTTRFTISYVLVQPRDAMAVARIKREVARLGYVALTRKEFNQATADYYTYKTGI 254
               +     + +  ++V  R    V  +  E+      +   + F+  TA+       I
Sbjct: 203 GEELFEINNEYNM--MIVSVRSGEDVNLVSEEIKDELEDSRGDENFSVLTAEQLA--ESI 258

Query: 255 GTNILIMTV-------ISFLVGLSISGQTFYSFILENLEKFGALKAIGAKGTELIFMIFF 307
            +   ++T+       IS LVG      T +  ILE  +  G LKA+GA+ T ++ +   
Sbjct: 259 NSIFEVLTIFLVGVAGISLLVGAVGISNTMHMSILERRKDIGILKALGAENTTILSIFVV 318

Query: 308 MATFTALTGFGLGVGLVTLMITVARTQLPSYAAIVTFWNLGLAFAMVLVIAGI------- 360
            A F  L G     G+V  M+ +   +   Y A ++ + L  A+    +I G+       
Sbjct: 319 EAGFLGLFG-----GIVGTMLGILIAKAIEYIAAISGYGLIRAWISWELIVGVLVFSFVV 373

Query: 361 ---SSYFGIRRVLRIEPFDIFRG 380
              S YF  R   ++ P D  RG
Sbjct: 374 GILSGYFPARSGAKLNPVDTLRG 396