Pairwise Alignments

Query, 380 a.a., ABC-type antimicrobial peptide transport system, permease component from Variovorax sp. SCN45

Subject, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score = 58.9 bits (141), Expect = 2e-13
 Identities = 83/407 (20%), Positives = 159/407 (39%), Gaps = 38/407 (9%)

Query: 1   MKYGGILRIGFKLLVNDRAKFSALLIGITFAVFLMMQMTAMFAGILNRAYSTVTNVGAAM 60
           MK   ++    + +   + +    +IGI   +  ++ + ++  G+ N     ++  GA++
Sbjct: 1   MKPKDVVSFAGRNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASV 60

Query: 61  WIMDPGVNTPTSAIA--LPDYLLDSVRSMDGVSYAVPMFVGGALVRLDSGTYQSVTVVGL 118
             + P     + A++    D  L +V  + GV   +  + GG  V      Y S      
Sbjct: 61  ITVYPSQQITSIAMSKNFNDRDLKAVEDVRGVDVVLYGWFGGTQVTYHDQEYYSSVFATK 120

Query: 119 DDTSLLGRPE-----IEQGRL---EDIYADNSFFVVDDAEFPKLENPHIGSTFELNDNRG 170
             T  +   E     +E+GR     D Y     + +    F +     IG   E+ND + 
Sbjct: 121 SSTYQIFFTEAYGYELEKGRWMKDSDKYTCVIGYSLAHDTFDR--EIDIGDKIEINDKKY 178

Query: 171 VIVGIAKVASNGLNGVPTLYTTYSRAIQYLPTTRFTISYVLVQPRDAMAVARIKREVARL 230
            +VGI +   N  +   ++   Y  A +         +  +V+ +D   V ++  ++   
Sbjct: 179 KVVGILEQIGNP-DDDNSIVIPYEAASEVFDVDD-EYNMFMVKIKDGEDVTKVSEDIEDE 236

Query: 231 GYVALTRKEFNQATADYYTYKTGIGTNILIMTV-------ISFLVGLSISGQTFYSFILE 283
              +   + F+  TA+       I +   ++T+       IS LVG      T +  ILE
Sbjct: 237 LEDSRGDENFSVLTAEQLA--ESISSIFSVLTIFLVGVAGISLLVGAVGISNTMHMSILE 294

Query: 284 NLEKFGALKAIGAKGTELIFMIFFMATFTALTGFGLGVGLVTLMITVARTQLPSYAAIVT 343
             +  G LKA+GA+   ++ +    A F  L G     G+V  ++ +   +   Y A ++
Sbjct: 295 RRKDIGILKALGAENNTILSIFVVEAGFLGLFG-----GIVGTILGILIAKAIEYVAAIS 349

Query: 344 FWNLGLAFAMVLVIAGI----------SSYFGIRRVLRIEPFDIFRG 380
            + L  A+    +I G+          S YF  R   ++ P D  RG
Sbjct: 350 GYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRG 396