Pairwise Alignments

Query, 308 a.a., Deacetylases, including yeast histone deacetylase and acetoin utilization protein from Variovorax sp. SCN45

Subject, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

 Score = 67.0 bits (162), Expect = 5e-16
 Identities = 68/303 (22%), Positives = 120/303 (39%), Gaps = 12/303 (3%)

Query: 6   ITHADCARHDMGAGHPESPERLSAIHDRLLIAGLLDYMAPYDAPLATQAQLARAHTMSHV 65
           + HA  ++  +   H     +  A++  LL   ++D  A +     +   L   H   +V
Sbjct: 5   VYHASYSQLALPHHHRFPITKYQALYQYLLDRQIVDPTAFHSPEAVSLEWLKSIHCPDYV 64

Query: 66  RELIAMA-PAEGLRFVDPDTRMNPHTLQAALRAAGAAVLATDLVLAGEAPTAFCNVRPPG 124
            + I    P + +R +     ++    Q  L + G   LA +L +               
Sbjct: 65  MQFIEQRLPDKAVRRLG--FPLSERLTQRTLYSVGGTHLACELAVRHGVALQLSGGY--- 119

Query: 125 HHATRDAAMGFCFFNNVAVGIRHALDVHGLKRVARIDFDVHHGNGSADIFRDDGRVLMCS 184
           HHA      G+C FN++     HA  + G+  V   D DVH G+G+A + +    +  CS
Sbjct: 120 HHAHYQFGSGYCVFNDLISAALHAQSLAGIVTVLIFDCDVHQGDGTAAMGQAYDNLYTCS 179

Query: 185 IFEKGLYPFAGEDDDGPRMVNIGLPSRSGGDAFRAAVTHHWLPALEAFAPQLVYVSAGFD 244
           I  +  +P   +  D    +++ L    G + +  AV      A+  + P L+   AG D
Sbjct: 180 IHCQENFPARKQTSD----LDLELSRGVGDEEYLEAVAQTLALAIRLYQPDLIIYDAGVD 235

Query: 245 GHREDDMGNLGLVENDYAWVTRKLMDVALRHCGGRVISSLEGGYALSALARSAAAHVKVL 304
            H+ D +G+L +         R ++D A        I+ + GG     +   A  H +V 
Sbjct: 236 VHQADRLGHLNITTEGIYQRDRLVLDNA--KAASIPIACVVGGGYSKEIEVLAERHAQVF 293

Query: 305 IGA 307
           I A
Sbjct: 294 IAA 296