Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 171 a.a., Sigma-24 (FecI) (NCBI) from Rhodospirillum rubrum S1H

 Score = 55.8 bits (133), Expect = 4e-13
 Identities = 45/142 (31%), Positives = 61/142 (42%), Gaps = 6/142 (4%)

Query: 28  LGSEDLANDALQEAYLRVENTNVRS-AVRYPSAYLFRIALNVAED---QRKSNSRLLSVG 83
           LG    A D +QEA+LR          VR P AYL+R+  N A D   +  +  R    G
Sbjct: 27  LGDRAQAEDVVQEAWLRFAGRAPGGEGVRQPLAYLYRVVRNTAVDCLRRLSAEERRNEAG 86

Query: 84  EVEELYDMADEMADPARGAEARNELEALERALAELPRRRRAIVLAARVDEMPHKDIAARY 143
           E+  L D   +   P   A  R+ L  +  AL+ELP R R      R + +  + IA   
Sbjct: 87  EI--LSDPDRQAPSPEEIALGRDHLRLVAAALSELPERNRRAFELQRFEGLSFQQIAQHL 144

Query: 144 GVSARTVEKELRAGLEHCCERL 165
            VS  T  +  R  + H   RL
Sbjct: 145 EVSPATAHRLARDAMVHVMGRL 166