Pairwise Alignments

Query, 320 a.a., DnaJ-class molecular chaperone CbpA from Variovorax sp. SCN45

Subject, 376 a.a., chaperone protein DnaJ (RefSeq) from Shewanella loihica PV-4

 Score =  128 bits (322), Expect = 2e-34
 Identities = 105/363 (28%), Positives = 165/363 (45%), Gaps = 53/363 (14%)

Query: 1   MEFKDYYSALGIDRTASDDEVRKAYRKLARKYHPDVSK-EPDAEQRMRDINEAKDVLGDK 59
           M  +DYY  LG+ R AS+ E++KAY++LA K+HPD +  +  AE   +++ EA ++L D 
Sbjct: 1   MSKRDYYEVLGVGRDASEREIKKAYKRLAMKFHPDRNPGDKAAEASFKEVKEAYEILTDS 60

Query: 60  EKRAAYDALAERVA---RGGSPDGHFQPPPGWDEGFEF-----------RRGPNQGPADH 105
           +K+AAYD          RGG   G      G D G  F           RRG  +  A  
Sbjct: 61  DKKAAYDQFGHAGVDPNRGGGGFGG-----GADFGDVFGDVFGDIFGGGRRGGQRQAARG 115

Query: 106 ADFSEFFSSLFGEAER-------------------RGAARQNYKARGEDHHAAIEIALED 146
           +D          EA R                    GA + +        H   ++ +  
Sbjct: 116 SDLRYNLELSLEEAVRGLTKELRIPTLATCDLCDGSGAKKGSSPTTCGTCHGQGQVQMRQ 175

Query: 147 ALKGAEREITL---RAQTV-DAQGHPQWENR-----TLSVKIPPGVHPGQFIRLAGQGMP 197
                ++       R + + D  G    E R     TLSVKIP GV  G  IRL+G+G  
Sbjct: 176 GFFAVQQACPTCHGRGKIIKDPCGKCHGEGRVEKSKTLSVKIPAGVDTGDRIRLSGEGEA 235

Query: 198 GHGGEPPGDLYLEVRIAPHRLYRVEERDLYMPLPVTPAEAALGAQVQVPTPTGGVVEVTV 257
           G  G PPGDLY++V +  H ++  +  +LY  +P++ + AALG +++VPT   G V + +
Sbjct: 236 GEFGAPPGDLYVQVTVREHAIFVRDGNNLYCEVPISFSTAALGGEIEVPT-LDGKVNLKI 294

Query: 258 PRNARGGMKLRLKGRG---LAGKTPGDLYLLIEIALPPADSDDARKAYEQLAQATASFNP 314
           P   + G   RL+G+G   +     GDL   + +   P + +D +K   +    T + + 
Sbjct: 295 PSETQTGRMFRLRGKGVKSVRSHAVGDLLCKV-VMETPVNLNDKQKELLREFDNTLTGSS 353

Query: 315 RQH 317
           ++H
Sbjct: 354 KKH 356